Strain Fitness in Serratia liquefaciens MT49 around IAI46_15360

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15355 and IAI46_15360 overlap by 1 nucleotidesIAI46_15360 and IAI46_15365 are separated by 61 nucleotides IAI46_15355: IAI46_15355 - leucyl aminopeptidase family protein, at 3,214,411 to 3,215,823 _15355 IAI46_15360: IAI46_15360 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 3,215,823 to 3,216,956 _15360 IAI46_15365: IAI46_15365 - LacI family DNA-binding transcriptional regulator, at 3,217,018 to 3,218,010 _15365 Position (kb) 3215 3216 3217Strain fitness (log2 ratio) -2 -1 0 1at 3214.884 kb on + strand, within IAI46_15355at 3215.082 kb on + strand, within IAI46_15355at 3215.208 kb on + strand, within IAI46_15355at 3215.208 kb on + strand, within IAI46_15355at 3215.208 kb on + strand, within IAI46_15355at 3215.209 kb on - strand, within IAI46_15355at 3215.387 kb on - strand, within IAI46_15355at 3215.471 kb on - strand, within IAI46_15355at 3215.743 kb on + strandat 3215.829 kb on + strandat 3215.829 kb on + strandat 3215.830 kb on - strandat 3215.833 kb on + strandat 3215.834 kb on - strandat 3215.834 kb on - strandat 3215.834 kb on - strandat 3216.075 kb on + strand, within IAI46_15360at 3216.075 kb on + strand, within IAI46_15360at 3216.076 kb on - strand, within IAI46_15360at 3216.076 kb on - strand, within IAI46_15360at 3216.076 kb on - strand, within IAI46_15360at 3216.084 kb on + strand, within IAI46_15360at 3216.084 kb on + strand, within IAI46_15360at 3216.092 kb on + strand, within IAI46_15360at 3216.390 kb on + strand, within IAI46_15360at 3216.390 kb on + strand, within IAI46_15360at 3216.390 kb on + strand, within IAI46_15360at 3216.469 kb on + strand, within IAI46_15360at 3216.470 kb on - strand, within IAI46_15360at 3216.473 kb on + strand, within IAI46_15360at 3216.489 kb on + strand, within IAI46_15360at 3216.586 kb on + strand, within IAI46_15360at 3216.834 kb on + strand, within IAI46_15360at 3217.008 kb on + strandat 3217.009 kb on - strandat 3217.009 kb on - strandat 3217.163 kb on - strand, within IAI46_15365at 3217.345 kb on - strand, within IAI46_15365at 3217.346 kb on - strand, within IAI46_15365at 3217.366 kb on + strand, within IAI46_15365at 3217.367 kb on - strand, within IAI46_15365at 3217.367 kb on - strand, within IAI46_15365at 3217.367 kb on - strand, within IAI46_15365at 3217.450 kb on - strand, within IAI46_15365at 3217.672 kb on + strand, within IAI46_15365at 3217.678 kb on + strand, within IAI46_15365at 3217.780 kb on + strand, within IAI46_15365at 3217.781 kb on - strand, within IAI46_15365at 3217.781 kb on - strand, within IAI46_15365at 3217.782 kb on + strand, within IAI46_15365at 3217.883 kb on + strand, within IAI46_15365

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,214,884 + IAI46_15355 0.33 +0.7
3,215,082 + IAI46_15355 0.47 -0.4
3,215,208 + IAI46_15355 0.56 -0.2
3,215,208 + IAI46_15355 0.56 +0.8
3,215,208 + IAI46_15355 0.56 +0.8
3,215,209 - IAI46_15355 0.56 -0.0
3,215,387 - IAI46_15355 0.69 +0.3
3,215,471 - IAI46_15355 0.75 -0.9
3,215,743 + +0.2
3,215,829 + +0.0
3,215,829 + -0.3
3,215,830 - +0.0
3,215,833 + +0.1
3,215,834 - -0.4
3,215,834 - +1.3
3,215,834 - -0.3
3,216,075 + IAI46_15360 0.22 -0.3
3,216,075 + IAI46_15360 0.22 +0.1
3,216,076 - IAI46_15360 0.22 -0.7
3,216,076 - IAI46_15360 0.22 +0.6
3,216,076 - IAI46_15360 0.22 -0.1
3,216,084 + IAI46_15360 0.23 +1.3
3,216,084 + IAI46_15360 0.23 +0.4
3,216,092 + IAI46_15360 0.24 +0.8
3,216,390 + IAI46_15360 0.50 +0.1
3,216,390 + IAI46_15360 0.50 -0.1
3,216,390 + IAI46_15360 0.50 +1.7
3,216,469 + IAI46_15360 0.57 -1.1
3,216,470 - IAI46_15360 0.57 -0.6
3,216,473 + IAI46_15360 0.57 +1.0
3,216,489 + IAI46_15360 0.59 +0.5
3,216,586 + IAI46_15360 0.67 +0.0
3,216,834 + IAI46_15360 0.89 +0.1
3,217,008 + +0.6
3,217,009 - +0.2
3,217,009 - -0.1
3,217,163 - IAI46_15365 0.15 +1.5
3,217,345 - IAI46_15365 0.33 -0.4
3,217,346 - IAI46_15365 0.33 -1.6
3,217,366 + IAI46_15365 0.35 +0.6
3,217,367 - IAI46_15365 0.35 +0.3
3,217,367 - IAI46_15365 0.35 +0.1
3,217,367 - IAI46_15365 0.35 -0.3
3,217,450 - IAI46_15365 0.44 -1.0
3,217,672 + IAI46_15365 0.66 +0.4
3,217,678 + IAI46_15365 0.66 -0.2
3,217,780 + IAI46_15365 0.77 -0.3
3,217,781 - IAI46_15365 0.77 -0.4
3,217,781 - IAI46_15365 0.77 +1.1
3,217,782 + IAI46_15365 0.77 -2.7
3,217,883 + IAI46_15365 0.87 -0.5

Or see this region's nucleotide sequence