Strain Fitness in Serratia liquefaciens MT49 around IAI46_14970

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14965 and IAI46_14970 are separated by 7 nucleotidesIAI46_14970 and IAI46_14975 are separated by 57 nucleotidesIAI46_14975 and IAI46_14980 are separated by 1 nucleotides IAI46_14965: IAI46_14965 - baseplate J/gp47 family protein, at 3,160,374 to 3,161,612 _14965 IAI46_14970: IAI46_14970 - hypothetical protein, at 3,161,620 to 3,161,979 _14970 IAI46_14975: IAI46_14975 - hypothetical protein, at 3,162,037 to 3,162,618 _14975 IAI46_14980: IAI46_14980 - oxidoreductase, at 3,162,620 to 3,163,282 _14980 Position (kb) 3161 3162Strain fitness (log2 ratio) -2 -1 0 1at 3160.628 kb on + strand, within IAI46_14965at 3160.704 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.728 kb on + strand, within IAI46_14965at 3160.729 kb on - strand, within IAI46_14965at 3160.729 kb on - strand, within IAI46_14965at 3160.733 kb on - strand, within IAI46_14965at 3160.733 kb on - strand, within IAI46_14965at 3160.733 kb on - strand, within IAI46_14965at 3160.742 kb on + strand, within IAI46_14965at 3160.804 kb on - strand, within IAI46_14965at 3160.846 kb on - strand, within IAI46_14965at 3160.866 kb on + strand, within IAI46_14965at 3160.872 kb on - strand, within IAI46_14965at 3160.873 kb on + strand, within IAI46_14965at 3160.874 kb on - strand, within IAI46_14965at 3160.889 kb on + strand, within IAI46_14965at 3160.890 kb on - strand, within IAI46_14965at 3160.890 kb on - strand, within IAI46_14965at 3160.910 kb on + strand, within IAI46_14965at 3160.910 kb on + strand, within IAI46_14965at 3160.924 kb on + strand, within IAI46_14965at 3160.924 kb on + strand, within IAI46_14965at 3160.963 kb on + strand, within IAI46_14965at 3160.968 kb on - strand, within IAI46_14965at 3160.968 kb on - strand, within IAI46_14965at 3160.979 kb on + strand, within IAI46_14965at 3161.082 kb on - strand, within IAI46_14965at 3161.105 kb on - strand, within IAI46_14965at 3161.105 kb on - strand, within IAI46_14965at 3161.213 kb on - strand, within IAI46_14965at 3161.215 kb on + strand, within IAI46_14965at 3161.215 kb on + strand, within IAI46_14965at 3161.215 kb on + strand, within IAI46_14965at 3161.216 kb on - strand, within IAI46_14965at 3161.216 kb on - strand, within IAI46_14965at 3161.219 kb on + strand, within IAI46_14965at 3161.219 kb on + strand, within IAI46_14965at 3161.219 kb on + strand, within IAI46_14965at 3161.222 kb on - strand, within IAI46_14965at 3161.222 kb on - strand, within IAI46_14965at 3161.222 kb on - strand, within IAI46_14965at 3161.222 kb on - strand, within IAI46_14965at 3161.229 kb on - strand, within IAI46_14965at 3161.246 kb on + strand, within IAI46_14965at 3161.246 kb on + strand, within IAI46_14965at 3161.247 kb on - strand, within IAI46_14965at 3161.329 kb on + strand, within IAI46_14965at 3161.330 kb on - strand, within IAI46_14965at 3161.333 kb on + strand, within IAI46_14965at 3161.334 kb on - strand, within IAI46_14965at 3161.368 kb on + strand, within IAI46_14965at 3161.382 kb on + strand, within IAI46_14965at 3161.423 kb on + strand, within IAI46_14965at 3161.424 kb on - strand, within IAI46_14965at 3161.424 kb on - strand, within IAI46_14965at 3161.474 kb on + strand, within IAI46_14965at 3161.475 kb on - strand, within IAI46_14965at 3161.532 kb on + strandat 3161.592 kb on + strandat 3161.592 kb on + strandat 3161.641 kb on + strandat 3161.647 kb on - strandat 3161.665 kb on + strand, within IAI46_14970at 3161.665 kb on + strand, within IAI46_14970at 3161.665 kb on + strand, within IAI46_14970at 3161.666 kb on - strand, within IAI46_14970at 3161.666 kb on - strand, within IAI46_14970at 3161.729 kb on + strand, within IAI46_14970at 3161.729 kb on + strand, within IAI46_14970at 3161.730 kb on - strand, within IAI46_14970at 3161.730 kb on - strand, within IAI46_14970at 3161.771 kb on + strand, within IAI46_14970at 3161.810 kb on + strand, within IAI46_14970at 3161.810 kb on + strand, within IAI46_14970at 3162.038 kb on + strandat 3162.039 kb on - strandat 3162.039 kb on - strandat 3162.055 kb on + strandat 3162.059 kb on + strandat 3162.114 kb on + strand, within IAI46_14975at 3162.114 kb on + strand, within IAI46_14975at 3162.115 kb on - strand, within IAI46_14975at 3162.115 kb on - strand, within IAI46_14975at 3162.115 kb on - strand, within IAI46_14975at 3162.262 kb on + strand, within IAI46_14975at 3162.275 kb on + strand, within IAI46_14975at 3162.298 kb on - strand, within IAI46_14975at 3162.299 kb on + strand, within IAI46_14975at 3162.299 kb on + strand, within IAI46_14975at 3162.309 kb on + strand, within IAI46_14975at 3162.310 kb on - strand, within IAI46_14975at 3162.357 kb on + strand, within IAI46_14975at 3162.358 kb on - strand, within IAI46_14975at 3162.385 kb on + strand, within IAI46_14975at 3162.390 kb on + strand, within IAI46_14975at 3162.390 kb on + strand, within IAI46_14975at 3162.422 kb on + strand, within IAI46_14975at 3162.460 kb on + strand, within IAI46_14975at 3162.471 kb on + strand, within IAI46_14975at 3162.520 kb on + strand, within IAI46_14975at 3162.521 kb on - strand, within IAI46_14975at 3162.566 kb on + strandat 3162.580 kb on + strandat 3162.581 kb on - strandat 3162.581 kb on - strandat 3162.601 kb on - strandat 3162.740 kb on - strand, within IAI46_14980at 3162.758 kb on + strand, within IAI46_14980at 3162.782 kb on + strand, within IAI46_14980at 3162.782 kb on + strand, within IAI46_14980at 3162.783 kb on - strand, within IAI46_14980at 3162.825 kb on + strand, within IAI46_14980at 3162.926 kb on - strand, within IAI46_14980at 3162.965 kb on + strand, within IAI46_14980at 3162.966 kb on - strand, within IAI46_14980at 3162.966 kb on - strand, within IAI46_14980at 3162.968 kb on - strand, within IAI46_14980

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,160,628 + IAI46_14965 0.21 +0.0
3,160,704 + IAI46_14965 0.27 +1.1
3,160,728 + IAI46_14965 0.29 +0.5
3,160,728 + IAI46_14965 0.29 +1.0
3,160,728 + IAI46_14965 0.29 -0.1
3,160,728 + IAI46_14965 0.29 -0.5
3,160,729 - IAI46_14965 0.29 +1.0
3,160,729 - IAI46_14965 0.29 +0.1
3,160,733 - IAI46_14965 0.29 -0.7
3,160,733 - IAI46_14965 0.29 +1.3
3,160,733 - IAI46_14965 0.29 +0.2
3,160,742 + IAI46_14965 0.30 +0.9
3,160,804 - IAI46_14965 0.35 -1.9
3,160,846 - IAI46_14965 0.38 -0.1
3,160,866 + IAI46_14965 0.40 -0.5
3,160,872 - IAI46_14965 0.40 +0.6
3,160,873 + IAI46_14965 0.40 -0.8
3,160,874 - IAI46_14965 0.40 +0.8
3,160,889 + IAI46_14965 0.42 +0.8
3,160,890 - IAI46_14965 0.42 +1.5
3,160,890 - IAI46_14965 0.42 +0.2
3,160,910 + IAI46_14965 0.43 -0.1
3,160,910 + IAI46_14965 0.43 +1.0
3,160,924 + IAI46_14965 0.44 +0.5
3,160,924 + IAI46_14965 0.44 +0.4
3,160,963 + IAI46_14965 0.48 +0.1
3,160,968 - IAI46_14965 0.48 +0.1
3,160,968 - IAI46_14965 0.48 -0.0
3,160,979 + IAI46_14965 0.49 -0.7
3,161,082 - IAI46_14965 0.57 +0.4
3,161,105 - IAI46_14965 0.59 -0.4
3,161,105 - IAI46_14965 0.59 +1.5
3,161,213 - IAI46_14965 0.68 -0.1
3,161,215 + IAI46_14965 0.68 -0.1
3,161,215 + IAI46_14965 0.68 -1.1
3,161,215 + IAI46_14965 0.68 -1.3
3,161,216 - IAI46_14965 0.68 +0.3
3,161,216 - IAI46_14965 0.68 +1.6
3,161,219 + IAI46_14965 0.68 +0.6
3,161,219 + IAI46_14965 0.68 +0.5
3,161,219 + IAI46_14965 0.68 +0.7
3,161,222 - IAI46_14965 0.68 -0.2
3,161,222 - IAI46_14965 0.68 +0.1
3,161,222 - IAI46_14965 0.68 +0.1
3,161,222 - IAI46_14965 0.68 -1.0
3,161,229 - IAI46_14965 0.69 -0.1
3,161,246 + IAI46_14965 0.70 +1.5
3,161,246 + IAI46_14965 0.70 +0.7
3,161,247 - IAI46_14965 0.70 -0.9
3,161,329 + IAI46_14965 0.77 -0.4
3,161,330 - IAI46_14965 0.77 +0.0
3,161,333 + IAI46_14965 0.77 -1.2
3,161,334 - IAI46_14965 0.77 +0.7
3,161,368 + IAI46_14965 0.80 +1.1
3,161,382 + IAI46_14965 0.81 +0.2
3,161,423 + IAI46_14965 0.85 -0.3
3,161,424 - IAI46_14965 0.85 +0.2
3,161,424 - IAI46_14965 0.85 -0.5
3,161,474 + IAI46_14965 0.89 -0.2
3,161,475 - IAI46_14965 0.89 +0.8
3,161,532 + -0.5
3,161,592 + -0.3
3,161,592 + +0.1
3,161,641 + -1.0
3,161,647 - -1.2
3,161,665 + IAI46_14970 0.12 +0.4
3,161,665 + IAI46_14970 0.12 +0.5
3,161,665 + IAI46_14970 0.12 +0.6
3,161,666 - IAI46_14970 0.13 +0.2
3,161,666 - IAI46_14970 0.13 -1.4
3,161,729 + IAI46_14970 0.30 +0.6
3,161,729 + IAI46_14970 0.30 +0.0
3,161,730 - IAI46_14970 0.31 +0.0
3,161,730 - IAI46_14970 0.31 -1.1
3,161,771 + IAI46_14970 0.42 -0.9
3,161,810 + IAI46_14970 0.53 +0.1
3,161,810 + IAI46_14970 0.53 -0.1
3,162,038 + -1.2
3,162,039 - +1.3
3,162,039 - -1.1
3,162,055 + -0.5
3,162,059 + -1.3
3,162,114 + IAI46_14975 0.13 -2.2
3,162,114 + IAI46_14975 0.13 +0.3
3,162,115 - IAI46_14975 0.13 -0.4
3,162,115 - IAI46_14975 0.13 +0.5
3,162,115 - IAI46_14975 0.13 -0.2
3,162,262 + IAI46_14975 0.39 -0.2
3,162,275 + IAI46_14975 0.41 +1.1
3,162,298 - IAI46_14975 0.45 +0.1
3,162,299 + IAI46_14975 0.45 +0.6
3,162,299 + IAI46_14975 0.45 -0.5
3,162,309 + IAI46_14975 0.47 -0.8
3,162,310 - IAI46_14975 0.47 +0.5
3,162,357 + IAI46_14975 0.55 -0.3
3,162,358 - IAI46_14975 0.55 +1.2
3,162,385 + IAI46_14975 0.60 +0.7
3,162,390 + IAI46_14975 0.61 -0.7
3,162,390 + IAI46_14975 0.61 +0.1
3,162,422 + IAI46_14975 0.66 -1.0
3,162,460 + IAI46_14975 0.73 +0.2
3,162,471 + IAI46_14975 0.75 +0.2
3,162,520 + IAI46_14975 0.83 +0.6
3,162,521 - IAI46_14975 0.83 +0.3
3,162,566 + +0.9
3,162,580 + -0.9
3,162,581 - -0.1
3,162,581 - +1.0
3,162,601 - -2.2
3,162,740 - IAI46_14980 0.18 -0.5
3,162,758 + IAI46_14980 0.21 +0.0
3,162,782 + IAI46_14980 0.24 +0.2
3,162,782 + IAI46_14980 0.24 +0.1
3,162,783 - IAI46_14980 0.25 +0.3
3,162,825 + IAI46_14980 0.31 +0.9
3,162,926 - IAI46_14980 0.46 +0.6
3,162,965 + IAI46_14980 0.52 -0.1
3,162,966 - IAI46_14980 0.52 -1.5
3,162,966 - IAI46_14980 0.52 +0.3
3,162,968 - IAI46_14980 0.52 +1.0

Or see this region's nucleotide sequence