Strain Fitness in Serratia liquefaciens MT49 around IAI46_14455

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14450 and IAI46_14455 are separated by 3 nucleotidesIAI46_14455 and IAI46_14460 are separated by 73 nucleotides IAI46_14450: IAI46_14450 - multidrug effflux MFS transporter, at 3,064,853 to 3,066,046 _14450 IAI46_14455: IAI46_14455 - catabolic alanine racemase DadX, at 3,066,050 to 3,067,123 _14455 IAI46_14460: IAI46_14460 - D-amino acid dehydrogenase, at 3,067,197 to 3,068,501 _14460 Position (kb) 3066 3067 3068Strain fitness (log2 ratio) -1 0 1at 3065.085 kb on - strand, within IAI46_14450at 3065.343 kb on + strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.349 kb on - strand, within IAI46_14450at 3065.379 kb on + strand, within IAI46_14450at 3065.520 kb on - strand, within IAI46_14450at 3065.706 kb on + strand, within IAI46_14450at 3065.706 kb on + strand, within IAI46_14450at 3065.707 kb on - strand, within IAI46_14450at 3065.766 kb on - strand, within IAI46_14450at 3065.767 kb on + strand, within IAI46_14450at 3065.768 kb on - strand, within IAI46_14450at 3065.768 kb on - strand, within IAI46_14450at 3065.973 kb on + strandat 3066.321 kb on - strand, within IAI46_14455at 3066.430 kb on + strand, within IAI46_14455at 3066.486 kb on + strand, within IAI46_14455at 3066.486 kb on + strand, within IAI46_14455at 3066.494 kb on + strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.574 kb on + strand, within IAI46_14455at 3066.575 kb on - strand, within IAI46_14455at 3066.656 kb on + strand, within IAI46_14455at 3066.673 kb on + strand, within IAI46_14455at 3066.680 kb on + strand, within IAI46_14455at 3066.681 kb on - strand, within IAI46_14455at 3066.681 kb on - strand, within IAI46_14455at 3066.928 kb on + strand, within IAI46_14455at 3066.929 kb on - strand, within IAI46_14455at 3066.995 kb on - strand, within IAI46_14455at 3067.009 kb on - strand, within IAI46_14455at 3067.185 kb on + strandat 3067.189 kb on + strandat 3067.190 kb on - strandat 3067.199 kb on - strandat 3067.441 kb on - strand, within IAI46_14460at 3067.486 kb on + strand, within IAI46_14460at 3067.580 kb on + strand, within IAI46_14460at 3067.735 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.844 kb on - strand, within IAI46_14460at 3067.844 kb on - strand, within IAI46_14460at 3068.114 kb on - strand, within IAI46_14460

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,065,085 - IAI46_14450 0.19 -0.0
3,065,343 + IAI46_14450 0.41 -0.2
3,065,344 - IAI46_14450 0.41 -0.5
3,065,344 - IAI46_14450 0.41 +0.1
3,065,344 - IAI46_14450 0.41 +0.3
3,065,348 + IAI46_14450 0.41 +1.0
3,065,348 + IAI46_14450 0.41 +1.1
3,065,348 + IAI46_14450 0.41 -0.1
3,065,348 + IAI46_14450 0.41 +0.2
3,065,349 - IAI46_14450 0.42 +0.8
3,065,379 + IAI46_14450 0.44 +0.6
3,065,520 - IAI46_14450 0.56 +1.2
3,065,706 + IAI46_14450 0.71 +0.0
3,065,706 + IAI46_14450 0.71 -1.3
3,065,707 - IAI46_14450 0.72 +0.7
3,065,766 - IAI46_14450 0.76 +0.8
3,065,767 + IAI46_14450 0.77 -0.4
3,065,768 - IAI46_14450 0.77 +0.0
3,065,768 - IAI46_14450 0.77 +0.3
3,065,973 + +0.6
3,066,321 - IAI46_14455 0.25 +0.5
3,066,430 + IAI46_14455 0.35 -0.4
3,066,486 + IAI46_14455 0.41 +0.0
3,066,486 + IAI46_14455 0.41 +0.4
3,066,494 + IAI46_14455 0.41 +0.4
3,066,495 - IAI46_14455 0.41 -0.1
3,066,495 - IAI46_14455 0.41 -1.2
3,066,495 - IAI46_14455 0.41 +0.8
3,066,574 + IAI46_14455 0.49 +0.5
3,066,575 - IAI46_14455 0.49 +0.4
3,066,656 + IAI46_14455 0.56 +0.4
3,066,673 + IAI46_14455 0.58 -1.4
3,066,680 + IAI46_14455 0.59 -1.6
3,066,681 - IAI46_14455 0.59 +0.2
3,066,681 - IAI46_14455 0.59 +0.8
3,066,928 + IAI46_14455 0.82 -1.6
3,066,929 - IAI46_14455 0.82 -0.3
3,066,995 - IAI46_14455 0.88 -0.7
3,067,009 - IAI46_14455 0.89 -0.2
3,067,185 + +1.6
3,067,189 + +0.2
3,067,190 - +1.0
3,067,199 - +0.8
3,067,441 - IAI46_14460 0.19 -0.2
3,067,486 + IAI46_14460 0.22 +1.3
3,067,580 + IAI46_14460 0.29 -1.0
3,067,735 + IAI46_14460 0.41 -1.7
3,067,843 + IAI46_14460 0.50 -0.7
3,067,843 + IAI46_14460 0.50 -0.6
3,067,843 + IAI46_14460 0.50 -0.4
3,067,843 + IAI46_14460 0.50 -0.2
3,067,844 - IAI46_14460 0.50 +0.7
3,067,844 - IAI46_14460 0.50 -0.5
3,068,114 - IAI46_14460 0.70 +1.1

Or see this region's nucleotide sequence