Strain Fitness in Serratia liquefaciens MT49 around IAI46_14370

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_14365 and IAI46_14370 are separated by 293 nucleotidesIAI46_14370 and IAI46_14375 overlap by 9 nucleotides IAI46_14365: IAI46_14365 - MipA/OmpV family protein, at 3,047,233 to 3,047,937 _14365 IAI46_14370: IAI46_14370 - hypothetical protein, at 3,048,231 to 3,048,436 _14370 IAI46_14375: IAI46_14375 - protein kinase YeaG, at 3,048,428 to 3,050,362 _14375 Position (kb) 3048 3049Strain fitness (log2 ratio) -1 0 1at 3047.261 kb on - strandat 3047.325 kb on - strand, within IAI46_14365at 3047.325 kb on - strand, within IAI46_14365at 3047.325 kb on - strand, within IAI46_14365at 3047.335 kb on - strand, within IAI46_14365at 3047.388 kb on - strand, within IAI46_14365at 3047.413 kb on - strand, within IAI46_14365at 3047.415 kb on - strand, within IAI46_14365at 3047.415 kb on - strand, within IAI46_14365at 3047.463 kb on - strand, within IAI46_14365at 3047.463 kb on - strand, within IAI46_14365at 3047.465 kb on + strand, within IAI46_14365at 3047.465 kb on + strand, within IAI46_14365at 3047.547 kb on - strand, within IAI46_14365at 3047.604 kb on + strand, within IAI46_14365at 3047.635 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3048.010 kb on + strandat 3048.011 kb on - strandat 3048.014 kb on - strandat 3048.014 kb on - strandat 3048.014 kb on - strandat 3048.022 kb on + strandat 3048.089 kb on + strandat 3048.090 kb on - strandat 3048.090 kb on - strandat 3048.108 kb on - strandat 3048.245 kb on - strandat 3048.288 kb on + strand, within IAI46_14370at 3048.289 kb on - strand, within IAI46_14370at 3048.328 kb on - strand, within IAI46_14370at 3048.340 kb on - strand, within IAI46_14370at 3048.553 kb on - strandat 3048.578 kb on - strandat 3048.641 kb on + strand, within IAI46_14375at 3049.091 kb on - strand, within IAI46_14375at 3049.166 kb on + strand, within IAI46_14375at 3049.273 kb on + strand, within IAI46_14375at 3049.322 kb on - strand, within IAI46_14375at 3049.400 kb on + strand, within IAI46_14375at 3049.419 kb on - strand, within IAI46_14375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
3,047,261 - -0.7
3,047,325 - IAI46_14365 0.13 +0.7
3,047,325 - IAI46_14365 0.13 -0.5
3,047,325 - IAI46_14365 0.13 -0.1
3,047,335 - IAI46_14365 0.14 +0.4
3,047,388 - IAI46_14365 0.22 +0.1
3,047,413 - IAI46_14365 0.26 +1.0
3,047,415 - IAI46_14365 0.26 -0.8
3,047,415 - IAI46_14365 0.26 -0.3
3,047,463 - IAI46_14365 0.33 -1.1
3,047,463 - IAI46_14365 0.33 +0.1
3,047,465 + IAI46_14365 0.33 +1.1
3,047,465 + IAI46_14365 0.33 +0.4
3,047,547 - IAI46_14365 0.45 -0.3
3,047,604 + IAI46_14365 0.53 -0.2
3,047,635 - IAI46_14365 0.57 -0.3
3,047,820 - IAI46_14365 0.83 +0.5
3,047,820 - IAI46_14365 0.83 +0.4
3,047,820 - IAI46_14365 0.83 -0.4
3,048,010 + +0.3
3,048,011 - +0.2
3,048,014 - +0.0
3,048,014 - -1.4
3,048,014 - +1.4
3,048,022 + +0.2
3,048,089 + -1.2
3,048,090 - +0.6
3,048,090 - -0.0
3,048,108 - +0.1
3,048,245 - -0.3
3,048,288 + IAI46_14370 0.28 +0.5
3,048,289 - IAI46_14370 0.28 +0.5
3,048,328 - IAI46_14370 0.47 +0.5
3,048,340 - IAI46_14370 0.53 -1.2
3,048,553 - -0.3
3,048,578 - +0.0
3,048,641 + IAI46_14375 0.11 +1.2
3,049,091 - IAI46_14375 0.34 +0.3
3,049,166 + IAI46_14375 0.38 +0.4
3,049,273 + IAI46_14375 0.44 +1.3
3,049,322 - IAI46_14375 0.46 +1.7
3,049,400 + IAI46_14375 0.50 -0.1
3,049,419 - IAI46_14375 0.51 +1.7

Or see this region's nucleotide sequence