Strain Fitness in Serratia liquefaciens MT49 around IAI46_14165

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14160 and IAI46_14165 are separated by 23 nucleotidesIAI46_14165 and IAI46_14170 are separated by 73 nucleotidesIAI46_14170 and IAI46_14175 are separated by 70 nucleotides IAI46_14160: IAI46_14160 - glycerol kinase, at 3,003,778 to 3,005,220 _14160 IAI46_14165: IAI46_14165 - ethanolamine utilization protein EutH, at 3,005,244 to 3,006,491 _14165 IAI46_14170: IAI46_14170 - DUF1937 family protein, at 3,006,565 to 3,006,921 _14170 IAI46_14175: IAI46_14175 - FAD-dependent oxidoreductase, at 3,006,992 to 3,008,209 _14175 Position (kb) 3005 3006 3007Strain fitness (log2 ratio) -2 -1 0 1 2at 3004.433 kb on - strand, within IAI46_14160at 3004.490 kb on - strand, within IAI46_14160at 3004.490 kb on - strand, within IAI46_14160at 3004.611 kb on - strand, within IAI46_14160at 3004.663 kb on + strand, within IAI46_14160at 3004.664 kb on - strand, within IAI46_14160at 3004.708 kb on + strand, within IAI46_14160at 3004.918 kb on + strand, within IAI46_14160at 3004.988 kb on - strand, within IAI46_14160at 3004.993 kb on - strand, within IAI46_14160at 3005.165 kb on - strandat 3005.187 kb on + strandat 3005.268 kb on - strandat 3005.271 kb on + strandat 3005.272 kb on - strandat 3005.274 kb on - strandat 3005.357 kb on + strandat 3005.397 kb on - strand, within IAI46_14165at 3005.399 kb on + strand, within IAI46_14165at 3005.400 kb on - strand, within IAI46_14165at 3005.424 kb on + strand, within IAI46_14165at 3005.425 kb on - strand, within IAI46_14165at 3005.429 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.433 kb on - strand, within IAI46_14165at 3005.601 kb on - strand, within IAI46_14165at 3005.656 kb on - strand, within IAI46_14165at 3005.736 kb on - strand, within IAI46_14165at 3005.736 kb on - strand, within IAI46_14165at 3005.739 kb on - strand, within IAI46_14165at 3005.754 kb on - strand, within IAI46_14165at 3005.878 kb on + strand, within IAI46_14165at 3005.915 kb on + strand, within IAI46_14165at 3005.915 kb on + strand, within IAI46_14165at 3005.916 kb on - strand, within IAI46_14165at 3005.979 kb on - strand, within IAI46_14165at 3006.230 kb on + strand, within IAI46_14165at 3006.231 kb on - strand, within IAI46_14165at 3006.353 kb on + strand, within IAI46_14165at 3006.542 kb on + strandat 3006.546 kb on + strandat 3006.546 kb on + strandat 3006.547 kb on - strandat 3006.547 kb on - strandat 3006.552 kb on + strandat 3006.570 kb on + strandat 3006.575 kb on + strandat 3006.735 kb on + strand, within IAI46_14170at 3006.782 kb on + strand, within IAI46_14170at 3006.885 kb on - strand, within IAI46_14170at 3006.919 kb on + strandat 3006.954 kb on + strandat 3006.954 kb on + strandat 3007.119 kb on - strand, within IAI46_14175at 3007.298 kb on + strand, within IAI46_14175at 3007.355 kb on - strand, within IAI46_14175at 3007.355 kb on - strand, within IAI46_14175at 3007.365 kb on + strand, within IAI46_14175at 3007.365 kb on + strand, within IAI46_14175at 3007.365 kb on + strand, within IAI46_14175at 3007.366 kb on - strand, within IAI46_14175at 3007.366 kb on - strand, within IAI46_14175at 3007.366 kb on - strand, within IAI46_14175at 3007.368 kb on + strand, within IAI46_14175at 3007.429 kb on - strand, within IAI46_14175

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,004,433 - IAI46_14160 0.45 +0.1
3,004,490 - IAI46_14160 0.49 +1.3
3,004,490 - IAI46_14160 0.49 -0.4
3,004,611 - IAI46_14160 0.58 +0.4
3,004,663 + IAI46_14160 0.61 -0.9
3,004,664 - IAI46_14160 0.61 -0.1
3,004,708 + IAI46_14160 0.64 +1.4
3,004,918 + IAI46_14160 0.79 +0.4
3,004,988 - IAI46_14160 0.84 -2.6
3,004,993 - IAI46_14160 0.84 +1.6
3,005,165 - -0.2
3,005,187 + +0.4
3,005,268 - -0.9
3,005,271 + -1.0
3,005,272 - +0.2
3,005,274 - +0.8
3,005,357 + -2.3
3,005,397 - IAI46_14165 0.12 -0.8
3,005,399 + IAI46_14165 0.12 -0.0
3,005,400 - IAI46_14165 0.12 -0.2
3,005,424 + IAI46_14165 0.14 +0.6
3,005,425 - IAI46_14165 0.15 -0.3
3,005,429 + IAI46_14165 0.15 +0.5
3,005,432 + IAI46_14165 0.15 +0.1
3,005,432 + IAI46_14165 0.15 -0.6
3,005,432 + IAI46_14165 0.15 -0.9
3,005,432 + IAI46_14165 0.15 +0.6
3,005,433 - IAI46_14165 0.15 -0.1
3,005,601 - IAI46_14165 0.29 +0.8
3,005,656 - IAI46_14165 0.33 -0.3
3,005,736 - IAI46_14165 0.39 +0.0
3,005,736 - IAI46_14165 0.39 -1.4
3,005,739 - IAI46_14165 0.40 +0.5
3,005,754 - IAI46_14165 0.41 +1.6
3,005,878 + IAI46_14165 0.51 +0.3
3,005,915 + IAI46_14165 0.54 -0.2
3,005,915 + IAI46_14165 0.54 +1.8
3,005,916 - IAI46_14165 0.54 +0.3
3,005,979 - IAI46_14165 0.59 +0.0
3,006,230 + IAI46_14165 0.79 +0.1
3,006,231 - IAI46_14165 0.79 -0.4
3,006,353 + IAI46_14165 0.89 +0.7
3,006,542 + -0.5
3,006,546 + +1.1
3,006,546 + -0.5
3,006,547 - -0.5
3,006,547 - +1.1
3,006,552 + +0.7
3,006,570 + +0.2
3,006,575 + -0.3
3,006,735 + IAI46_14170 0.48 +0.2
3,006,782 + IAI46_14170 0.61 +0.8
3,006,885 - IAI46_14170 0.90 +0.8
3,006,919 + +1.1
3,006,954 + +0.4
3,006,954 + -0.4
3,007,119 - IAI46_14175 0.10 +0.2
3,007,298 + IAI46_14175 0.25 +0.3
3,007,355 - IAI46_14175 0.30 +0.5
3,007,355 - IAI46_14175 0.30 +0.2
3,007,365 + IAI46_14175 0.31 -0.0
3,007,365 + IAI46_14175 0.31 +1.2
3,007,365 + IAI46_14175 0.31 -0.5
3,007,366 - IAI46_14175 0.31 -1.4
3,007,366 - IAI46_14175 0.31 -1.2
3,007,366 - IAI46_14175 0.31 +0.7
3,007,368 + IAI46_14175 0.31 +1.1
3,007,429 - IAI46_14175 0.36 +0.2

Or see this region's nucleotide sequence