Strain Fitness in Serratia liquefaciens MT49 around IAI46_13480

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13475 and IAI46_13480 overlap by 4 nucleotidesIAI46_13480 and IAI46_13485 are separated by 122 nucleotidesIAI46_13485 and IAI46_13490 are separated by 96 nucleotidesIAI46_13490 and IAI46_13495 overlap by 1 nucleotides IAI46_13475: IAI46_13475 - TIGR01620 family protein, at 2,879,112 to 2,880,173 _13475 IAI46_13480: IAI46_13480 - YcjX family protein, at 2,880,170 to 2,881,567 _13480 IAI46_13485: IAI46_13485 - phage shock protein PspD, at 2,881,690 to 2,881,938 _13485 IAI46_13490: IAI46_13490 - envelope stress response membrane protein PspC, at 2,882,035 to 2,882,394 _13490 IAI46_13495: IAI46_13495 - envelope stress response membrane protein PspB, at 2,882,394 to 2,882,621 _13495 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -2 -1 0 1at 2879.434 kb on + strand, within IAI46_13475at 2879.435 kb on - strand, within IAI46_13475at 2879.745 kb on + strand, within IAI46_13475at 2879.746 kb on - strand, within IAI46_13475at 2879.898 kb on - strand, within IAI46_13475at 2879.898 kb on - strand, within IAI46_13475at 2879.898 kb on - strand, within IAI46_13475at 2879.911 kb on - strand, within IAI46_13475at 2879.926 kb on - strand, within IAI46_13475at 2880.181 kb on + strandat 2880.182 kb on - strandat 2880.220 kb on + strandat 2880.220 kb on + strandat 2880.220 kb on + strandat 2880.220 kb on + strandat 2880.221 kb on - strandat 2880.542 kb on - strand, within IAI46_13480at 2880.544 kb on + strand, within IAI46_13480at 2880.982 kb on - strand, within IAI46_13480at 2880.982 kb on - strand, within IAI46_13480at 2880.982 kb on - strand, within IAI46_13480at 2881.042 kb on + strand, within IAI46_13480at 2881.043 kb on - strand, within IAI46_13480at 2881.088 kb on + strand, within IAI46_13480at 2881.123 kb on - strand, within IAI46_13480at 2881.123 kb on - strand, within IAI46_13480at 2881.167 kb on + strand, within IAI46_13480at 2881.327 kb on - strand, within IAI46_13480at 2881.624 kb on + strandat 2881.648 kb on - strandat 2881.648 kb on - strandat 2881.766 kb on - strand, within IAI46_13485at 2881.843 kb on + strand, within IAI46_13485at 2881.843 kb on + strand, within IAI46_13485at 2881.844 kb on - strand, within IAI46_13485at 2881.893 kb on + strand, within IAI46_13485at 2881.894 kb on - strand, within IAI46_13485at 2882.020 kb on - strandat 2882.036 kb on + strandat 2882.129 kb on + strand, within IAI46_13490at 2882.463 kb on - strand, within IAI46_13495

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,879,434 + IAI46_13475 0.30 +0.5
2,879,435 - IAI46_13475 0.30 +1.0
2,879,745 + IAI46_13475 0.60 -1.8
2,879,746 - IAI46_13475 0.60 -0.7
2,879,898 - IAI46_13475 0.74 +0.7
2,879,898 - IAI46_13475 0.74 +0.2
2,879,898 - IAI46_13475 0.74 +0.8
2,879,911 - IAI46_13475 0.75 -0.7
2,879,926 - IAI46_13475 0.77 -0.8
2,880,181 + -0.5
2,880,182 - -0.1
2,880,220 + -0.7
2,880,220 + +0.3
2,880,220 + +1.1
2,880,220 + +0.0
2,880,221 - +0.1
2,880,542 - IAI46_13480 0.27 +0.9
2,880,544 + IAI46_13480 0.27 +1.0
2,880,982 - IAI46_13480 0.58 +0.2
2,880,982 - IAI46_13480 0.58 +0.3
2,880,982 - IAI46_13480 0.58 +0.1
2,881,042 + IAI46_13480 0.62 +0.2
2,881,043 - IAI46_13480 0.62 +0.4
2,881,088 + IAI46_13480 0.66 +0.8
2,881,123 - IAI46_13480 0.68 -2.0
2,881,123 - IAI46_13480 0.68 +0.0
2,881,167 + IAI46_13480 0.71 +1.3
2,881,327 - IAI46_13480 0.83 +0.8
2,881,624 + -1.5
2,881,648 - -0.3
2,881,648 - -0.4
2,881,766 - IAI46_13485 0.31 -0.7
2,881,843 + IAI46_13485 0.61 +0.3
2,881,843 + IAI46_13485 0.61 +0.9
2,881,844 - IAI46_13485 0.62 -0.2
2,881,893 + IAI46_13485 0.82 +0.3
2,881,894 - IAI46_13485 0.82 -0.3
2,882,020 - -2.4
2,882,036 + +0.6
2,882,129 + IAI46_13490 0.26 -0.2
2,882,463 - IAI46_13495 0.30 -0.7

Or see this region's nucleotide sequence