Strain Fitness in Serratia liquefaciens MT49 around IAI46_13210

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13200 and IAI46_13205 are separated by 12 nucleotidesIAI46_13205 and IAI46_13210 are separated by 22 nucleotidesIAI46_13210 and IAI46_13215 are separated by 19 nucleotides IAI46_13200: IAI46_13200 - sugar ABC transporter permease, at 2,816,558 to 2,817,496 _13200 IAI46_13205: IAI46_13205 - carbohydrate ABC transporter permease, at 2,817,509 to 2,818,327 _13205 IAI46_13210: IAI46_13210 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,818,350 to 2,819,462 _13210 IAI46_13215: IAI46_13215 - Gfo/Idh/MocA family oxidoreductase, at 2,819,482 to 2,820,765 _13215 Position (kb) 2818 2819 2820Strain fitness (log2 ratio) -2 -1 0 1at 2817.371 kb on + strand, within IAI46_13200at 2817.378 kb on - strand, within IAI46_13200at 2817.386 kb on + strand, within IAI46_13200at 2817.516 kb on + strandat 2817.516 kb on + strandat 2817.517 kb on - strandat 2817.521 kb on - strandat 2817.622 kb on + strand, within IAI46_13205at 2817.947 kb on - strand, within IAI46_13205at 2817.950 kb on + strand, within IAI46_13205at 2818.025 kb on + strand, within IAI46_13205at 2818.286 kb on + strandat 2818.342 kb on + strandat 2818.347 kb on - strandat 2818.385 kb on - strandat 2818.385 kb on - strandat 2818.430 kb on + strandat 2818.431 kb on - strandat 2818.431 kb on - strandat 2818.602 kb on + strand, within IAI46_13210at 2818.629 kb on + strand, within IAI46_13210at 2818.929 kb on + strand, within IAI46_13210at 2818.930 kb on - strand, within IAI46_13210at 2819.001 kb on - strand, within IAI46_13210at 2819.021 kb on + strand, within IAI46_13210at 2819.121 kb on - strand, within IAI46_13210at 2819.351 kb on + strandat 2819.352 kb on - strandat 2819.460 kb on + strandat 2819.460 kb on + strandat 2819.903 kb on - strand, within IAI46_13215at 2819.903 kb on - strand, within IAI46_13215at 2819.903 kb on - strand, within IAI46_13215at 2820.223 kb on + strand, within IAI46_13215

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,817,371 + IAI46_13200 0.87 +0.2
2,817,378 - IAI46_13200 0.87 +0.1
2,817,386 + IAI46_13200 0.88 -0.1
2,817,516 + +1.6
2,817,516 + -1.7
2,817,517 - -0.0
2,817,521 - +0.4
2,817,622 + IAI46_13205 0.14 +0.9
2,817,947 - IAI46_13205 0.53 +0.2
2,817,950 + IAI46_13205 0.54 +1.3
2,818,025 + IAI46_13205 0.63 +0.1
2,818,286 + -0.5
2,818,342 + +0.3
2,818,347 - +0.8
2,818,385 - -0.1
2,818,385 - -2.5
2,818,430 + +0.8
2,818,431 - +0.3
2,818,431 - -1.0
2,818,602 + IAI46_13210 0.23 -0.1
2,818,629 + IAI46_13210 0.25 -1.3
2,818,929 + IAI46_13210 0.52 -0.7
2,818,930 - IAI46_13210 0.52 -1.5
2,819,001 - IAI46_13210 0.58 +1.0
2,819,021 + IAI46_13210 0.60 -0.2
2,819,121 - IAI46_13210 0.69 +1.0
2,819,351 + -0.9
2,819,352 - +0.4
2,819,460 + +1.3
2,819,460 + +0.4
2,819,903 - IAI46_13215 0.33 +0.3
2,819,903 - IAI46_13215 0.33 -0.8
2,819,903 - IAI46_13215 0.33 -1.4
2,820,223 + IAI46_13215 0.58 -0.5

Or see this region's nucleotide sequence