Strain Fitness in Serratia liquefaciens MT49 around IAI46_12950

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12945 and IAI46_12950 are separated by 33 nucleotidesIAI46_12950 and IAI46_12955 are separated by 123 nucleotides IAI46_12945: IAI46_12945 - sugar ABC transporter permease, at 2,761,198 to 2,762,193 _12945 IAI46_12950: IAI46_12950 - ABC transporter substrate-binding protein, at 2,762,227 to 2,763,492 _12950 IAI46_12955: IAI46_12955 - LysR family transcriptional regulator, at 2,763,616 to 2,764,551 _12955 Position (kb) 2762 2763 2764Strain fitness (log2 ratio) -2 -1 0 1 2at 2761.237 kb on - strandat 2761.270 kb on - strandat 2761.382 kb on + strand, within IAI46_12945at 2761.450 kb on - strand, within IAI46_12945at 2761.517 kb on + strand, within IAI46_12945at 2761.692 kb on - strand, within IAI46_12945at 2761.943 kb on + strand, within IAI46_12945at 2761.944 kb on - strand, within IAI46_12945at 2762.007 kb on - strand, within IAI46_12945at 2762.311 kb on + strandat 2762.317 kb on - strandat 2762.331 kb on - strandat 2762.671 kb on - strand, within IAI46_12950at 2762.691 kb on - strand, within IAI46_12950at 2763.071 kb on + strand, within IAI46_12950at 2763.074 kb on + strand, within IAI46_12950at 2763.075 kb on - strand, within IAI46_12950at 2763.211 kb on + strand, within IAI46_12950at 2763.325 kb on - strand, within IAI46_12950at 2763.472 kb on - strandat 2763.472 kb on - strandat 2763.528 kb on + strandat 2763.540 kb on - strandat 2763.925 kb on + strand, within IAI46_12955at 2763.925 kb on + strand, within IAI46_12955at 2763.925 kb on + strand, within IAI46_12955at 2763.925 kb on + strand, within IAI46_12955at 2763.926 kb on - strand, within IAI46_12955at 2763.927 kb on + strand, within IAI46_12955at 2763.927 kb on + strand, within IAI46_12955at 2763.927 kb on + strand, within IAI46_12955at 2763.936 kb on - strand, within IAI46_12955at 2763.955 kb on + strand, within IAI46_12955at 2764.025 kb on + strand, within IAI46_12955at 2764.125 kb on + strand, within IAI46_12955at 2764.233 kb on + strand, within IAI46_12955at 2764.329 kb on - strand, within IAI46_12955at 2764.366 kb on + strand, within IAI46_12955at 2764.378 kb on - strand, within IAI46_12955at 2764.457 kb on - strand, within IAI46_12955

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,761,237 - +1.9
2,761,270 - -1.2
2,761,382 + IAI46_12945 0.18 +0.3
2,761,450 - IAI46_12945 0.25 -0.1
2,761,517 + IAI46_12945 0.32 +0.4
2,761,692 - IAI46_12945 0.50 -0.3
2,761,943 + IAI46_12945 0.75 -1.0
2,761,944 - IAI46_12945 0.75 -0.4
2,762,007 - IAI46_12945 0.81 -0.5
2,762,311 + -0.1
2,762,317 - -0.8
2,762,331 - -0.1
2,762,671 - IAI46_12950 0.35 -0.7
2,762,691 - IAI46_12950 0.37 +0.6
2,763,071 + IAI46_12950 0.67 +0.6
2,763,074 + IAI46_12950 0.67 +0.3
2,763,075 - IAI46_12950 0.67 -1.8
2,763,211 + IAI46_12950 0.78 -0.1
2,763,325 - IAI46_12950 0.87 +2.4
2,763,472 - +0.3
2,763,472 - +1.0
2,763,528 + -0.8
2,763,540 - -0.1
2,763,925 + IAI46_12955 0.33 +1.3
2,763,925 + IAI46_12955 0.33 -0.1
2,763,925 + IAI46_12955 0.33 +0.2
2,763,925 + IAI46_12955 0.33 +0.1
2,763,926 - IAI46_12955 0.33 -0.3
2,763,927 + IAI46_12955 0.33 -0.7
2,763,927 + IAI46_12955 0.33 +0.9
2,763,927 + IAI46_12955 0.33 +0.6
2,763,936 - IAI46_12955 0.34 +1.6
2,763,955 + IAI46_12955 0.36 +0.6
2,764,025 + IAI46_12955 0.44 -0.6
2,764,125 + IAI46_12955 0.54 -1.1
2,764,233 + IAI46_12955 0.66 -0.2
2,764,329 - IAI46_12955 0.76 +0.5
2,764,366 + IAI46_12955 0.80 -1.5
2,764,378 - IAI46_12955 0.81 +0.7
2,764,457 - IAI46_12955 0.90 +1.6

Or see this region's nucleotide sequence