Strain Fitness in Serratia liquefaciens MT49 around IAI46_12930

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12925 and IAI46_12930 are separated by 20 nucleotidesIAI46_12930 and IAI46_12935 are separated by 64 nucleotides IAI46_12925: IAI46_12925 - alpha-glucosidase, at 2,756,067 to 2,757,761 _12925 IAI46_12930: IAI46_12930 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,757,782 to 2,758,897 _12930 IAI46_12935: IAI46_12935 - alpha-glucosidase, at 2,758,962 to 2,760,323 _12935 Position (kb) 2757 2758 2759Strain fitness (log2 ratio) -1 0 1at 2757.040 kb on + strand, within IAI46_12925at 2757.088 kb on + strand, within IAI46_12925at 2757.277 kb on + strand, within IAI46_12925at 2757.278 kb on - strand, within IAI46_12925at 2757.278 kb on - strand, within IAI46_12925at 2757.373 kb on + strand, within IAI46_12925at 2757.373 kb on + strand, within IAI46_12925at 2757.374 kb on - strand, within IAI46_12925at 2757.374 kb on - strand, within IAI46_12925at 2757.562 kb on + strand, within IAI46_12925at 2757.651 kb on - strandat 2757.653 kb on + strandat 2757.672 kb on - strandat 2757.707 kb on - strandat 2757.741 kb on + strandat 2757.741 kb on + strandat 2757.742 kb on - strandat 2757.776 kb on - strandat 2757.779 kb on - strandat 2757.957 kb on + strand, within IAI46_12930at 2758.033 kb on + strand, within IAI46_12930at 2758.100 kb on + strand, within IAI46_12930at 2758.157 kb on + strand, within IAI46_12930at 2758.157 kb on + strand, within IAI46_12930at 2758.158 kb on - strand, within IAI46_12930at 2758.158 kb on - strand, within IAI46_12930at 2758.230 kb on + strand, within IAI46_12930at 2758.230 kb on + strand, within IAI46_12930at 2758.329 kb on + strand, within IAI46_12930at 2758.329 kb on + strand, within IAI46_12930at 2758.330 kb on - strand, within IAI46_12930at 2758.330 kb on - strand, within IAI46_12930at 2758.439 kb on - strand, within IAI46_12930at 2758.439 kb on - strand, within IAI46_12930at 2758.713 kb on + strand, within IAI46_12930at 2758.713 kb on + strand, within IAI46_12930at 2758.714 kb on - strand, within IAI46_12930at 2758.714 kb on - strand, within IAI46_12930at 2758.885 kb on + strandat 2758.886 kb on - strandat 2758.886 kb on - strandat 2758.886 kb on - strandat 2758.973 kb on - strandat 2759.222 kb on + strand, within IAI46_12935at 2759.260 kb on - strand, within IAI46_12935at 2759.260 kb on - strand, within IAI46_12935at 2759.261 kb on + strand, within IAI46_12935at 2759.261 kb on + strand, within IAI46_12935at 2759.378 kb on - strand, within IAI46_12935at 2759.386 kb on + strand, within IAI46_12935at 2759.436 kb on - strand, within IAI46_12935at 2759.586 kb on - strand, within IAI46_12935at 2759.602 kb on + strand, within IAI46_12935at 2759.641 kb on + strand, within IAI46_12935at 2759.642 kb on - strand, within IAI46_12935at 2759.642 kb on - strand, within IAI46_12935at 2759.642 kb on - strand, within IAI46_12935at 2759.696 kb on - strand, within IAI46_12935at 2759.696 kb on - strand, within IAI46_12935at 2759.786 kb on - strand, within IAI46_12935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
2,757,040 + IAI46_12925 0.57 -0.2
2,757,088 + IAI46_12925 0.60 +0.9
2,757,277 + IAI46_12925 0.71 +0.3
2,757,278 - IAI46_12925 0.71 -0.3
2,757,278 - IAI46_12925 0.71 -0.1
2,757,373 + IAI46_12925 0.77 -0.4
2,757,373 + IAI46_12925 0.77 +0.9
2,757,374 - IAI46_12925 0.77 +1.6
2,757,374 - IAI46_12925 0.77 +0.5
2,757,562 + IAI46_12925 0.88 -1.1
2,757,651 - +1.3
2,757,653 + -1.1
2,757,672 - +0.0
2,757,707 - +0.3
2,757,741 + +0.1
2,757,741 + +1.4
2,757,742 - +0.3
2,757,776 - +0.2
2,757,779 - -1.0
2,757,957 + IAI46_12930 0.16 -0.2
2,758,033 + IAI46_12930 0.22 -0.1
2,758,100 + IAI46_12930 0.28 -0.8
2,758,157 + IAI46_12930 0.34 +0.3
2,758,157 + IAI46_12930 0.34 -0.7
2,758,158 - IAI46_12930 0.34 +0.8
2,758,158 - IAI46_12930 0.34 +0.2
2,758,230 + IAI46_12930 0.40 +0.3
2,758,230 + IAI46_12930 0.40 +0.6
2,758,329 + IAI46_12930 0.49 -0.1
2,758,329 + IAI46_12930 0.49 +1.3
2,758,330 - IAI46_12930 0.49 +0.4
2,758,330 - IAI46_12930 0.49 +0.5
2,758,439 - IAI46_12930 0.59 -1.4
2,758,439 - IAI46_12930 0.59 +0.1
2,758,713 + IAI46_12930 0.83 -0.9
2,758,713 + IAI46_12930 0.83 +0.2
2,758,714 - IAI46_12930 0.84 +0.4
2,758,714 - IAI46_12930 0.84 +1.3
2,758,885 + -0.8
2,758,886 - -1.1
2,758,886 - -0.4
2,758,886 - -0.8
2,758,973 - +0.1
2,759,222 + IAI46_12935 0.19 -1.4
2,759,260 - IAI46_12935 0.22 +0.2
2,759,260 - IAI46_12935 0.22 +0.4
2,759,261 + IAI46_12935 0.22 +1.6
2,759,261 + IAI46_12935 0.22 +0.7
2,759,378 - IAI46_12935 0.31 -0.1
2,759,386 + IAI46_12935 0.31 -0.2
2,759,436 - IAI46_12935 0.35 -0.1
2,759,586 - IAI46_12935 0.46 -1.3
2,759,602 + IAI46_12935 0.47 -1.5
2,759,641 + IAI46_12935 0.50 -0.5
2,759,642 - IAI46_12935 0.50 +0.4
2,759,642 - IAI46_12935 0.50 +0.5
2,759,642 - IAI46_12935 0.50 -1.1
2,759,696 - IAI46_12935 0.54 -0.1
2,759,696 - IAI46_12935 0.54 -0.4
2,759,786 - IAI46_12935 0.60 +0.3

Or see this region's nucleotide sequence