Strain Fitness in Serratia liquefaciens MT49 around IAI46_12575

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12570 and IAI46_12575 are separated by 108 nucleotidesIAI46_12575 and IAI46_12580 are separated by 165 nucleotidesIAI46_12580 and IAI46_12585 are separated by 18 nucleotides IAI46_12570: IAI46_12570 - formate hydrogenlyase transcriptional activator FlhA, at 2,670,678 to 2,672,744 _12570 IAI46_12575: IAI46_12575 - protein deglycase HchA, at 2,672,853 to 2,673,728 _12575 IAI46_12580: IAI46_12580 - hypothetical protein, at 2,673,894 to 2,674,115 _12580 IAI46_12585: IAI46_12585 - hypothetical protein, at 2,674,134 to 2,675,105 _12585 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -1 0 1 2at 2672.128 kb on + strand, within IAI46_12570at 2672.286 kb on + strand, within IAI46_12570at 2672.511 kb on - strand, within IAI46_12570at 2672.738 kb on + strandat 2672.807 kb on + strandat 2672.807 kb on + strandat 2672.807 kb on + strandat 2672.840 kb on + strandat 2672.863 kb on + strandat 2672.864 kb on - strandat 2672.928 kb on + strandat 2672.928 kb on + strandat 2672.940 kb on - strandat 2672.944 kb on - strand, within IAI46_12575at 2672.993 kb on + strand, within IAI46_12575at 2672.994 kb on - strand, within IAI46_12575at 2673.039 kb on + strand, within IAI46_12575at 2673.219 kb on + strand, within IAI46_12575at 2673.220 kb on - strand, within IAI46_12575at 2673.294 kb on + strand, within IAI46_12575at 2673.332 kb on + strand, within IAI46_12575at 2673.749 kb on + strandat 2673.916 kb on + strandat 2674.000 kb on + strand, within IAI46_12580at 2674.095 kb on - strandat 2674.343 kb on - strand, within IAI46_12585at 2674.343 kb on - strand, within IAI46_12585at 2674.418 kb on + strand, within IAI46_12585at 2674.419 kb on - strand, within IAI46_12585at 2674.530 kb on - strand, within IAI46_12585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
2,672,128 + IAI46_12570 0.70 -0.9
2,672,286 + IAI46_12570 0.78 -0.5
2,672,511 - IAI46_12570 0.89 +1.6
2,672,738 + -0.0
2,672,807 + +0.1
2,672,807 + +0.2
2,672,807 + +0.3
2,672,840 + +0.2
2,672,863 + -0.9
2,672,864 - -1.0
2,672,928 + +0.1
2,672,928 + -1.0
2,672,940 - -0.7
2,672,944 - IAI46_12575 0.10 +0.8
2,672,993 + IAI46_12575 0.16 +0.7
2,672,994 - IAI46_12575 0.16 +0.3
2,673,039 + IAI46_12575 0.21 +0.9
2,673,219 + IAI46_12575 0.42 -0.1
2,673,220 - IAI46_12575 0.42 -0.3
2,673,294 + IAI46_12575 0.50 -0.6
2,673,332 + IAI46_12575 0.55 -1.5
2,673,749 + -0.0
2,673,916 + +1.5
2,674,000 + IAI46_12580 0.48 -1.6
2,674,095 - +2.0
2,674,343 - IAI46_12585 0.22 -0.6
2,674,343 - IAI46_12585 0.22 -0.1
2,674,418 + IAI46_12585 0.29 +1.0
2,674,419 - IAI46_12585 0.29 +1.1
2,674,530 - IAI46_12585 0.41 +0.9

Or see this region's nucleotide sequence