Strain Fitness in Serratia liquefaciens MT49 around IAI46_12260

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12255 and IAI46_12260 are separated by 96 nucleotidesIAI46_12260 and IAI46_12265 are separated by 146 nucleotidesIAI46_12265 and IAI46_12270 are separated by 27 nucleotides IAI46_12255: IAI46_12255 - MFS transporter, at 2,599,756 to 2,600,982 _12255 IAI46_12260: IAI46_12260 - LysR family transcriptional regulator, at 2,601,079 to 2,602,017 _12260 IAI46_12265: IAI46_12265 - amidinotransferase, at 2,602,164 to 2,602,925 _12265 IAI46_12270: IAI46_12270 - ABC transporter substrate-binding protein, at 2,602,953 to 2,603,726 _12270 Position (kb) 2601 2602 2603Strain fitness (log2 ratio) -1 0 1 2at 2600.123 kb on + strand, within IAI46_12255at 2600.123 kb on + strand, within IAI46_12255at 2600.123 kb on + strand, within IAI46_12255at 2600.124 kb on - strand, within IAI46_12255at 2600.509 kb on + strand, within IAI46_12255at 2600.689 kb on - strand, within IAI46_12255at 2600.710 kb on + strand, within IAI46_12255at 2600.871 kb on - strandat 2600.871 kb on - strandat 2600.956 kb on - strandat 2600.985 kb on + strandat 2600.985 kb on + strandat 2600.986 kb on - strandat 2600.986 kb on - strandat 2601.002 kb on + strandat 2601.025 kb on + strandat 2601.056 kb on + strandat 2601.067 kb on + strandat 2601.068 kb on - strandat 2601.267 kb on + strand, within IAI46_12260at 2601.268 kb on - strand, within IAI46_12260at 2601.383 kb on + strand, within IAI46_12260at 2601.422 kb on + strand, within IAI46_12260at 2601.614 kb on + strand, within IAI46_12260at 2601.617 kb on + strand, within IAI46_12260at 2601.682 kb on - strand, within IAI46_12260at 2601.688 kb on + strand, within IAI46_12260at 2601.931 kb on + strandat 2601.932 kb on - strandat 2601.952 kb on - strandat 2601.988 kb on - strandat 2602.025 kb on + strandat 2602.055 kb on - strandat 2602.057 kb on - strandat 2602.057 kb on - strandat 2602.069 kb on + strandat 2602.172 kb on + strandat 2602.224 kb on - strandat 2602.278 kb on + strand, within IAI46_12265at 2602.278 kb on + strand, within IAI46_12265at 2602.278 kb on + strand, within IAI46_12265at 2602.307 kb on - strand, within IAI46_12265at 2602.479 kb on - strand, within IAI46_12265at 2602.479 kb on - strand, within IAI46_12265at 2602.680 kb on - strand, within IAI46_12265at 2602.761 kb on + strand, within IAI46_12265at 2602.773 kb on - strand, within IAI46_12265at 2602.790 kb on + strand, within IAI46_12265at 2602.790 kb on + strand, within IAI46_12265at 2602.791 kb on - strand, within IAI46_12265

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,600,123 + IAI46_12255 0.30 +0.4
2,600,123 + IAI46_12255 0.30 +0.7
2,600,123 + IAI46_12255 0.30 +2.1
2,600,124 - IAI46_12255 0.30 +1.5
2,600,509 + IAI46_12255 0.61 -0.1
2,600,689 - IAI46_12255 0.76 +0.5
2,600,710 + IAI46_12255 0.78 -0.8
2,600,871 - +0.5
2,600,871 - +0.0
2,600,956 - -0.5
2,600,985 + -0.2
2,600,985 + -0.5
2,600,986 - +0.4
2,600,986 - +0.3
2,601,002 + +2.2
2,601,025 + -0.7
2,601,056 + -0.1
2,601,067 + +1.0
2,601,068 - -0.1
2,601,267 + IAI46_12260 0.20 +1.0
2,601,268 - IAI46_12260 0.20 +0.6
2,601,383 + IAI46_12260 0.32 +0.1
2,601,422 + IAI46_12260 0.37 -0.6
2,601,614 + IAI46_12260 0.57 -0.3
2,601,617 + IAI46_12260 0.57 +1.1
2,601,682 - IAI46_12260 0.64 -0.1
2,601,688 + IAI46_12260 0.65 -0.9
2,601,931 + -0.2
2,601,932 - -1.1
2,601,952 - +1.0
2,601,988 - +0.3
2,602,025 + +0.3
2,602,055 - +0.2
2,602,057 - +1.3
2,602,057 - -0.2
2,602,069 + -1.4
2,602,172 + +0.3
2,602,224 - +0.5
2,602,278 + IAI46_12265 0.15 +0.4
2,602,278 + IAI46_12265 0.15 +1.3
2,602,278 + IAI46_12265 0.15 +0.7
2,602,307 - IAI46_12265 0.19 +0.7
2,602,479 - IAI46_12265 0.41 -0.0
2,602,479 - IAI46_12265 0.41 -0.0
2,602,680 - IAI46_12265 0.68 +0.3
2,602,761 + IAI46_12265 0.78 -0.4
2,602,773 - IAI46_12265 0.80 -0.6
2,602,790 + IAI46_12265 0.82 -0.2
2,602,790 + IAI46_12265 0.82 -1.0
2,602,791 - IAI46_12265 0.82 +0.6

Or see this region's nucleotide sequence