Strain Fitness in Serratia liquefaciens MT49 around IAI46_12235

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12225 and IAI46_12230 overlap by 4 nucleotidesIAI46_12230 and IAI46_12235 are separated by 71 nucleotidesIAI46_12235 and IAI46_12240 are separated by 196 nucleotides IAI46_12225: IAI46_12225 - hemin ABC transporter substrate-binding protein, at 2,593,461 to 2,594,279 _12225 IAI46_12230: IAI46_12230 - SelT/SelW/SelH family protein, at 2,594,276 to 2,594,569 _12230 IAI46_12235: IAI46_12235 - sigma 54-interacting transcriptional regulator, at 2,594,641 to 2,596,599 _12235 IAI46_12240: IAI46_12240 - Gfo/Idh/MocA family oxidoreductase, at 2,596,796 to 2,597,812 _12240 Position (kb) 2594 2595 2596 2597Strain fitness (log2 ratio) -2 -1 0 1at 2594.026 kb on + strand, within IAI46_12225at 2594.027 kb on - strand, within IAI46_12225at 2594.294 kb on - strandat 2594.301 kb on - strandat 2594.424 kb on + strand, within IAI46_12230at 2594.424 kb on + strand, within IAI46_12230at 2594.620 kb on - strandat 2594.739 kb on + strandat 2594.739 kb on + strandat 2595.098 kb on + strand, within IAI46_12235at 2595.507 kb on + strand, within IAI46_12235at 2596.136 kb on + strand, within IAI46_12235at 2596.136 kb on + strand, within IAI46_12235at 2596.137 kb on - strand, within IAI46_12235at 2596.236 kb on - strand, within IAI46_12235at 2596.289 kb on + strand, within IAI46_12235at 2596.454 kb on - strandat 2596.479 kb on + strandat 2596.480 kb on - strandat 2596.775 kb on + strandat 2596.784 kb on + strandat 2596.784 kb on + strandat 2596.795 kb on + strandat 2597.020 kb on - strand, within IAI46_12240at 2597.387 kb on + strand, within IAI46_12240at 2597.388 kb on - strand, within IAI46_12240at 2597.513 kb on + strand, within IAI46_12240at 2597.514 kb on - strand, within IAI46_12240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
2,594,026 + IAI46_12225 0.69 +0.3
2,594,027 - IAI46_12225 0.69 -0.0
2,594,294 - +1.0
2,594,301 - -0.7
2,594,424 + IAI46_12230 0.50 +0.7
2,594,424 + IAI46_12230 0.50 -0.8
2,594,620 - -0.0
2,594,739 + -1.9
2,594,739 + +0.5
2,595,098 + IAI46_12235 0.23 -0.3
2,595,507 + IAI46_12235 0.44 +0.2
2,596,136 + IAI46_12235 0.76 +0.4
2,596,136 + IAI46_12235 0.76 -0.7
2,596,137 - IAI46_12235 0.76 -1.4
2,596,236 - IAI46_12235 0.81 +0.3
2,596,289 + IAI46_12235 0.84 +0.6
2,596,454 - +0.1
2,596,479 + +0.4
2,596,480 - +0.0
2,596,775 + -0.7
2,596,784 + +0.6
2,596,784 + -0.3
2,596,795 + +0.4
2,597,020 - IAI46_12240 0.22 +0.5
2,597,387 + IAI46_12240 0.58 -0.2
2,597,388 - IAI46_12240 0.58 +1.6
2,597,513 + IAI46_12240 0.71 -0.3
2,597,514 - IAI46_12240 0.71 +0.8

Or see this region's nucleotide sequence