Strain Fitness in Serratia liquefaciens MT49 around IAI46_11960

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11955 and IAI46_11960 are separated by 84 nucleotidesIAI46_11960 and IAI46_11965 are separated by 19 nucleotidesIAI46_11965 and IAI46_11970 overlap by 4 nucleotides IAI46_11955: IAI46_11955 - LacI family DNA-binding transcriptional regulator, at 2,531,507 to 2,532,547 _11955 IAI46_11960: IAI46_11960 - GMC family oxidoreductase, at 2,532,632 to 2,534,236 _11960 IAI46_11965: IAI46_11965 - hypothetical protein, at 2,534,256 to 2,534,786 _11965 IAI46_11970: IAI46_11970 - cytochrome c, at 2,534,783 to 2,536,018 _11970 Position (kb) 2532 2533 2534 2535Strain fitness (log2 ratio) -2 -1 0 1at 2531.694 kb on + strand, within IAI46_11955at 2531.694 kb on + strand, within IAI46_11955at 2531.946 kb on + strand, within IAI46_11955at 2531.981 kb on + strand, within IAI46_11955at 2531.982 kb on - strand, within IAI46_11955at 2531.982 kb on - strand, within IAI46_11955at 2532.014 kb on - strand, within IAI46_11955at 2532.189 kb on - strand, within IAI46_11955at 2532.189 kb on - strand, within IAI46_11955at 2532.189 kb on - strand, within IAI46_11955at 2532.464 kb on - strandat 2532.625 kb on + strandat 2532.736 kb on + strandat 2532.806 kb on - strand, within IAI46_11960at 2532.933 kb on + strand, within IAI46_11960at 2532.952 kb on - strand, within IAI46_11960at 2532.977 kb on - strand, within IAI46_11960at 2533.028 kb on + strand, within IAI46_11960at 2533.028 kb on + strand, within IAI46_11960at 2533.287 kb on + strand, within IAI46_11960at 2533.288 kb on + strand, within IAI46_11960at 2533.331 kb on + strand, within IAI46_11960at 2533.364 kb on + strand, within IAI46_11960at 2533.409 kb on - strand, within IAI46_11960at 2533.429 kb on + strand, within IAI46_11960at 2533.429 kb on + strand, within IAI46_11960at 2533.476 kb on + strand, within IAI46_11960at 2533.477 kb on - strand, within IAI46_11960at 2533.477 kb on - strand, within IAI46_11960at 2533.567 kb on + strand, within IAI46_11960at 2533.596 kb on - strand, within IAI46_11960at 2533.695 kb on + strand, within IAI46_11960at 2533.695 kb on + strand, within IAI46_11960at 2533.696 kb on - strand, within IAI46_11960at 2533.904 kb on - strand, within IAI46_11960at 2533.976 kb on - strand, within IAI46_11960at 2533.995 kb on + strand, within IAI46_11960at 2533.995 kb on + strand, within IAI46_11960at 2534.008 kb on - strand, within IAI46_11960at 2534.114 kb on - strandat 2534.309 kb on - strand, within IAI46_11965at 2534.309 kb on - strand, within IAI46_11965at 2534.313 kb on - strand, within IAI46_11965at 2534.313 kb on - strand, within IAI46_11965at 2534.363 kb on - strand, within IAI46_11965at 2534.371 kb on - strand, within IAI46_11965at 2534.373 kb on + strand, within IAI46_11965at 2534.424 kb on + strand, within IAI46_11965at 2534.425 kb on - strand, within IAI46_11965at 2534.434 kb on - strand, within IAI46_11965at 2534.570 kb on - strand, within IAI46_11965at 2534.633 kb on + strand, within IAI46_11965at 2534.756 kb on - strandat 2534.877 kb on + strandat 2534.972 kb on + strand, within IAI46_11970at 2534.973 kb on - strand, within IAI46_11970at 2535.176 kb on + strand, within IAI46_11970at 2535.176 kb on + strand, within IAI46_11970at 2535.176 kb on + strand, within IAI46_11970at 2535.186 kb on - strand, within IAI46_11970at 2535.198 kb on + strand, within IAI46_11970

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,531,694 + IAI46_11955 0.18 -0.7
2,531,694 + IAI46_11955 0.18 -1.3
2,531,946 + IAI46_11955 0.42 -0.5
2,531,981 + IAI46_11955 0.46 -1.2
2,531,982 - IAI46_11955 0.46 +1.3
2,531,982 - IAI46_11955 0.46 -2.5
2,532,014 - IAI46_11955 0.49 -0.1
2,532,189 - IAI46_11955 0.66 +0.7
2,532,189 - IAI46_11955 0.66 +0.7
2,532,189 - IAI46_11955 0.66 +0.6
2,532,464 - -1.1
2,532,625 + -0.6
2,532,736 + +0.1
2,532,806 - IAI46_11960 0.11 +0.1
2,532,933 + IAI46_11960 0.19 +0.4
2,532,952 - IAI46_11960 0.20 -0.9
2,532,977 - IAI46_11960 0.21 +0.3
2,533,028 + IAI46_11960 0.25 -0.8
2,533,028 + IAI46_11960 0.25 -0.6
2,533,287 + IAI46_11960 0.41 +1.0
2,533,288 + IAI46_11960 0.41 -0.0
2,533,331 + IAI46_11960 0.44 +0.5
2,533,364 + IAI46_11960 0.46 +0.7
2,533,409 - IAI46_11960 0.48 -0.4
2,533,429 + IAI46_11960 0.50 -0.6
2,533,429 + IAI46_11960 0.50 -0.7
2,533,476 + IAI46_11960 0.53 -0.7
2,533,477 - IAI46_11960 0.53 -0.7
2,533,477 - IAI46_11960 0.53 -0.8
2,533,567 + IAI46_11960 0.58 +0.1
2,533,596 - IAI46_11960 0.60 +0.5
2,533,695 + IAI46_11960 0.66 -0.4
2,533,695 + IAI46_11960 0.66 +0.7
2,533,696 - IAI46_11960 0.66 +0.5
2,533,904 - IAI46_11960 0.79 +0.4
2,533,976 - IAI46_11960 0.84 +0.2
2,533,995 + IAI46_11960 0.85 +0.3
2,533,995 + IAI46_11960 0.85 +0.1
2,534,008 - IAI46_11960 0.86 +0.5
2,534,114 - -0.7
2,534,309 - IAI46_11965 0.10 -0.9
2,534,309 - IAI46_11965 0.10 +0.9
2,534,313 - IAI46_11965 0.11 +0.8
2,534,313 - IAI46_11965 0.11 +0.3
2,534,363 - IAI46_11965 0.20 -0.4
2,534,371 - IAI46_11965 0.22 -0.7
2,534,373 + IAI46_11965 0.22 -0.0
2,534,424 + IAI46_11965 0.32 +1.0
2,534,425 - IAI46_11965 0.32 +0.3
2,534,434 - IAI46_11965 0.34 -0.2
2,534,570 - IAI46_11965 0.59 -0.7
2,534,633 + IAI46_11965 0.71 +0.5
2,534,756 - -0.2
2,534,877 + -0.5
2,534,972 + IAI46_11970 0.15 -0.4
2,534,973 - IAI46_11970 0.15 +0.3
2,535,176 + IAI46_11970 0.32 +0.3
2,535,176 + IAI46_11970 0.32 +1.3
2,535,176 + IAI46_11970 0.32 -0.7
2,535,186 - IAI46_11970 0.33 +0.4
2,535,198 + IAI46_11970 0.34 +0.4

Or see this region's nucleotide sequence