Strain Fitness in Serratia liquefaciens MT49 around IAI46_11645

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11640 and IAI46_11645 are separated by 141 nucleotidesIAI46_11645 and IAI46_11650 are separated by 525 nucleotides IAI46_11640: IAI46_11640 - YdgA family protein, at 2,456,020 to 2,457,543 _11640 IAI46_11645: IAI46_11645 - mannose-6-phosphate isomerase, at 2,457,685 to 2,458,863 _11645 IAI46_11650: IAI46_11650 - hypothetical protein, at 2,459,389 to 2,459,721 _11650 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -1 0 1at 2456.811 kb on + strand, within IAI46_11640at 2456.888 kb on - strand, within IAI46_11640at 2456.888 kb on - strand, within IAI46_11640at 2457.686 kb on + strandat 2457.780 kb on + strandat 2457.781 kb on - strandat 2457.805 kb on - strand, within IAI46_11645at 2458.456 kb on + strand, within IAI46_11645at 2458.457 kb on - strand, within IAI46_11645at 2458.488 kb on - strand, within IAI46_11645at 2458.491 kb on + strand, within IAI46_11645at 2458.680 kb on + strand, within IAI46_11645at 2458.797 kb on - strandat 2458.833 kb on - strandat 2458.870 kb on - strandat 2459.007 kb on + strandat 2459.008 kb on - strandat 2459.010 kb on - strandat 2459.015 kb on - strandat 2459.015 kb on - strandat 2459.015 kb on - strandat 2459.050 kb on - strandat 2459.052 kb on - strandat 2459.059 kb on + strandat 2459.084 kb on - strandat 2459.111 kb on - strandat 2459.275 kb on - strandat 2459.335 kb on + strandat 2459.335 kb on + strandat 2459.336 kb on - strandat 2459.468 kb on - strand, within IAI46_11650at 2459.507 kb on + strand, within IAI46_11650at 2459.507 kb on + strand, within IAI46_11650at 2459.574 kb on + strand, within IAI46_11650at 2459.694 kb on + strandat 2459.703 kb on + strandat 2459.719 kb on + strandat 2459.741 kb on + strandat 2459.741 kb on + strandat 2459.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,456,811 + IAI46_11640 0.52 +1.0
2,456,888 - IAI46_11640 0.57 +0.5
2,456,888 - IAI46_11640 0.57 -0.0
2,457,686 + +0.5
2,457,780 + -1.2
2,457,781 - +1.0
2,457,805 - IAI46_11645 0.10 -0.1
2,458,456 + IAI46_11645 0.65 -0.6
2,458,457 - IAI46_11645 0.65 -1.2
2,458,488 - IAI46_11645 0.68 +0.7
2,458,491 + IAI46_11645 0.68 +0.1
2,458,680 + IAI46_11645 0.84 +0.2
2,458,797 - +0.6
2,458,833 - -0.4
2,458,870 - -0.8
2,459,007 + -0.0
2,459,008 - -0.3
2,459,010 - -0.1
2,459,015 - -0.0
2,459,015 - +0.2
2,459,015 - +0.3
2,459,050 - +0.3
2,459,052 - +0.2
2,459,059 + -0.1
2,459,084 - -0.1
2,459,111 - +0.1
2,459,275 - -1.3
2,459,335 + -0.1
2,459,335 + -0.2
2,459,336 - -0.3
2,459,468 - IAI46_11650 0.24 +0.8
2,459,507 + IAI46_11650 0.35 +0.8
2,459,507 + IAI46_11650 0.35 +1.6
2,459,574 + IAI46_11650 0.56 -1.3
2,459,694 + -0.8
2,459,703 + +1.0
2,459,719 + -0.6
2,459,741 + -0.3
2,459,741 + +0.3
2,459,837 + +0.6

Or see this region's nucleotide sequence