Strain Fitness in Serratia liquefaciens MT49 around IAI46_11640

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11635 and IAI46_11640 are separated by 194 nucleotidesIAI46_11640 and IAI46_11645 are separated by 141 nucleotides IAI46_11635: IAI46_11635 - beta-lactamase family protein, at 2,454,659 to 2,455,825 _11635 IAI46_11640: IAI46_11640 - YdgA family protein, at 2,456,020 to 2,457,543 _11640 IAI46_11645: IAI46_11645 - mannose-6-phosphate isomerase, at 2,457,685 to 2,458,863 _11645 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -1 0 1at 2455.072 kb on + strand, within IAI46_11635at 2455.081 kb on + strand, within IAI46_11635at 2455.273 kb on + strand, within IAI46_11635at 2455.348 kb on + strand, within IAI46_11635at 2455.349 kb on - strand, within IAI46_11635at 2455.350 kb on + strand, within IAI46_11635at 2455.620 kb on + strand, within IAI46_11635at 2455.839 kb on - strandat 2455.844 kb on + strandat 2456.022 kb on - strandat 2456.153 kb on + strandat 2456.164 kb on - strandat 2456.271 kb on - strand, within IAI46_11640at 2456.282 kb on - strand, within IAI46_11640at 2456.326 kb on - strand, within IAI46_11640at 2456.563 kb on - strand, within IAI46_11640at 2456.811 kb on + strand, within IAI46_11640at 2456.888 kb on - strand, within IAI46_11640at 2456.888 kb on - strand, within IAI46_11640at 2457.686 kb on + strandat 2457.780 kb on + strandat 2457.781 kb on - strandat 2457.805 kb on - strand, within IAI46_11645at 2458.456 kb on + strand, within IAI46_11645at 2458.457 kb on - strand, within IAI46_11645at 2458.488 kb on - strand, within IAI46_11645at 2458.491 kb on + strand, within IAI46_11645

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,455,072 + IAI46_11635 0.35 +0.1
2,455,081 + IAI46_11635 0.36 -0.0
2,455,273 + IAI46_11635 0.53 +0.8
2,455,348 + IAI46_11635 0.59 +0.3
2,455,349 - IAI46_11635 0.59 +1.0
2,455,350 + IAI46_11635 0.59 -1.2
2,455,620 + IAI46_11635 0.82 -0.3
2,455,839 - +0.5
2,455,844 + -0.4
2,456,022 - +1.2
2,456,153 + +0.8
2,456,164 - -0.1
2,456,271 - IAI46_11640 0.16 +0.5
2,456,282 - IAI46_11640 0.17 +0.1
2,456,326 - IAI46_11640 0.20 +0.9
2,456,563 - IAI46_11640 0.36 -0.3
2,456,811 + IAI46_11640 0.52 +1.0
2,456,888 - IAI46_11640 0.57 +0.5
2,456,888 - IAI46_11640 0.57 -0.0
2,457,686 + +0.5
2,457,780 + -1.2
2,457,781 - +1.0
2,457,805 - IAI46_11645 0.10 -0.1
2,458,456 + IAI46_11645 0.65 -0.6
2,458,457 - IAI46_11645 0.65 -1.2
2,458,488 - IAI46_11645 0.68 +0.7
2,458,491 + IAI46_11645 0.68 +0.1

Or see this region's nucleotide sequence