Strain Fitness in Serratia liquefaciens MT49 around IAI46_11545

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_11540 and IAI46_11545 are separated by 177 nucleotidesIAI46_11545 and IAI46_11550 overlap by 4 nucleotidesIAI46_11550 and IAI46_11555 are separated by 9 nucleotidesIAI46_11555 and IAI46_11560 are separated by 95 nucleotides IAI46_11540: IAI46_11540 - adenosine deaminase, at 2,436,963 to 2,437,961 _11540 IAI46_11545: IAI46_11545 - AAA family ATPase, at 2,438,139 to 2,438,732 _11545 IAI46_11550: IAI46_11550 - PTS sugar transporter subunit IIA, at 2,438,729 to 2,439,166 _11550 IAI46_11555: IAI46_11555 - hypothetical protein, at 2,439,176 to 2,439,442 _11555 IAI46_11560: IAI46_11560 - class II fructose-bisphosphate aldolase, at 2,439,538 to 2,440,380 _11560 Position (kb) 2438 2439Strain fitness (log2 ratio) -2 -1 0 1 2at 2437.472 kb on + strand, within IAI46_11540at 2437.535 kb on + strand, within IAI46_11540at 2437.654 kb on + strand, within IAI46_11540at 2437.654 kb on + strand, within IAI46_11540at 2437.655 kb on - strand, within IAI46_11540at 2437.655 kb on - strand, within IAI46_11540at 2437.681 kb on + strand, within IAI46_11540at 2437.869 kb on - strandat 2437.990 kb on - strandat 2438.088 kb on - strandat 2438.311 kb on + strand, within IAI46_11545at 2438.311 kb on + strand, within IAI46_11545at 2438.312 kb on - strand, within IAI46_11545at 2438.442 kb on + strand, within IAI46_11545at 2438.442 kb on + strand, within IAI46_11545at 2438.572 kb on - strand, within IAI46_11545at 2438.607 kb on - strand, within IAI46_11545at 2438.623 kb on + strand, within IAI46_11545at 2438.623 kb on + strand, within IAI46_11545at 2438.623 kb on + strand, within IAI46_11545at 2438.994 kb on + strand, within IAI46_11550at 2439.017 kb on - strand, within IAI46_11550at 2439.017 kb on - strand, within IAI46_11550at 2439.017 kb on - strand, within IAI46_11550at 2439.052 kb on + strand, within IAI46_11550at 2439.052 kb on + strand, within IAI46_11550at 2439.052 kb on + strand, within IAI46_11550at 2439.055 kb on - strand, within IAI46_11550at 2439.169 kb on + strandat 2439.170 kb on - strandat 2439.285 kb on + strand, within IAI46_11555at 2439.368 kb on + strand, within IAI46_11555at 2439.568 kb on + strandat 2439.569 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
2,437,472 + IAI46_11540 0.51 +1.0
2,437,535 + IAI46_11540 0.57 +0.4
2,437,654 + IAI46_11540 0.69 -0.8
2,437,654 + IAI46_11540 0.69 -0.0
2,437,655 - IAI46_11540 0.69 +0.8
2,437,655 - IAI46_11540 0.69 -0.1
2,437,681 + IAI46_11540 0.72 +0.3
2,437,869 - +0.5
2,437,990 - +0.2
2,438,088 - +0.8
2,438,311 + IAI46_11545 0.29 +2.0
2,438,311 + IAI46_11545 0.29 +1.0
2,438,312 - IAI46_11545 0.29 +0.1
2,438,442 + IAI46_11545 0.51 +0.0
2,438,442 + IAI46_11545 0.51 -0.6
2,438,572 - IAI46_11545 0.73 +1.1
2,438,607 - IAI46_11545 0.79 -0.9
2,438,623 + IAI46_11545 0.81 -1.7
2,438,623 + IAI46_11545 0.81 +0.4
2,438,623 + IAI46_11545 0.81 +0.6
2,438,994 + IAI46_11550 0.61 -1.0
2,439,017 - IAI46_11550 0.66 -0.6
2,439,017 - IAI46_11550 0.66 -1.0
2,439,017 - IAI46_11550 0.66 -0.7
2,439,052 + IAI46_11550 0.74 +1.3
2,439,052 + IAI46_11550 0.74 +0.1
2,439,052 + IAI46_11550 0.74 -0.7
2,439,055 - IAI46_11550 0.74 -0.6
2,439,169 + -0.7
2,439,170 - -1.8
2,439,285 + IAI46_11555 0.41 +1.6
2,439,368 + IAI46_11555 0.72 -0.6
2,439,568 + +0.8
2,439,569 - +0.5

Or see this region's nucleotide sequence