Strain Fitness in Serratia liquefaciens MT49 around IAI46_11435

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11425 and IAI46_11430 overlap by 36 nucleotidesIAI46_11430 and IAI46_11435 are separated by 138 nucleotidesIAI46_11435 and IAI46_11440 are separated by 112 nucleotidesIAI46_11440 and IAI46_11445 are separated by 158 nucleotides IAI46_11425: IAI46_11425 - phosphotransferase, at 2,410,008 to 2,410,862 _11425 IAI46_11430: IAI46_11430 - cupin domain-containing protein, at 2,410,827 to 2,411,330 _11430 IAI46_11435: IAI46_11435 - benzoate/H(+) symporter BenE family transporter, at 2,411,469 to 2,412,662 _11435 IAI46_11440: IAI46_11440 - helix-turn-helix transcriptional regulator, at 2,412,775 to 2,413,338 _11440 IAI46_11445: IAI46_11445 - S9 family peptidase, at 2,413,497 to 2,415,587 _11445 Position (kb) 2411 2412 2413Strain fitness (log2 ratio) -2 -1 0 1at 2410.496 kb on + strand, within IAI46_11425at 2410.498 kb on + strand, within IAI46_11425at 2410.498 kb on + strand, within IAI46_11425at 2410.498 kb on + strand, within IAI46_11425at 2410.498 kb on + strand, within IAI46_11425at 2410.498 kb on + strand, within IAI46_11425at 2410.499 kb on - strand, within IAI46_11425at 2410.499 kb on - strand, within IAI46_11425at 2410.499 kb on - strand, within IAI46_11425at 2410.499 kb on - strand, within IAI46_11425at 2410.499 kb on - strand, within IAI46_11425at 2410.499 kb on - strand, within IAI46_11425at 2410.554 kb on - strand, within IAI46_11425at 2410.612 kb on - strand, within IAI46_11425at 2410.876 kb on + strandat 2410.882 kb on - strand, within IAI46_11430at 2410.978 kb on + strand, within IAI46_11430at 2411.135 kb on - strand, within IAI46_11430at 2411.242 kb on + strand, within IAI46_11430at 2411.331 kb on - strandat 2411.331 kb on - strandat 2411.355 kb on + strandat 2411.404 kb on + strandat 2411.419 kb on + strandat 2411.445 kb on + strandat 2411.513 kb on + strandat 2411.787 kb on - strand, within IAI46_11435at 2411.788 kb on + strand, within IAI46_11435at 2411.788 kb on + strand, within IAI46_11435at 2411.788 kb on + strand, within IAI46_11435at 2411.852 kb on + strand, within IAI46_11435at 2411.910 kb on - strand, within IAI46_11435at 2411.910 kb on - strand, within IAI46_11435at 2412.033 kb on - strand, within IAI46_11435at 2412.033 kb on - strand, within IAI46_11435at 2412.172 kb on - strand, within IAI46_11435at 2412.179 kb on - strand, within IAI46_11435at 2412.179 kb on - strand, within IAI46_11435at 2412.219 kb on + strand, within IAI46_11435at 2412.295 kb on + strand, within IAI46_11435at 2412.296 kb on - strand, within IAI46_11435at 2412.567 kb on - strandat 2412.714 kb on + strandat 2412.714 kb on + strandat 2412.727 kb on + strandat 2412.728 kb on - strandat 2413.016 kb on - strand, within IAI46_11440at 2413.042 kb on + strand, within IAI46_11440at 2413.276 kb on + strand, within IAI46_11440at 2413.302 kb on - strandat 2413.409 kb on - strandat 2413.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,410,496 + IAI46_11425 0.57 +0.7
2,410,498 + IAI46_11425 0.57 +0.8
2,410,498 + IAI46_11425 0.57 -0.5
2,410,498 + IAI46_11425 0.57 -0.3
2,410,498 + IAI46_11425 0.57 +0.0
2,410,498 + IAI46_11425 0.57 +0.3
2,410,499 - IAI46_11425 0.57 -2.3
2,410,499 - IAI46_11425 0.57 +0.6
2,410,499 - IAI46_11425 0.57 -0.3
2,410,499 - IAI46_11425 0.57 -0.7
2,410,499 - IAI46_11425 0.57 +1.3
2,410,499 - IAI46_11425 0.57 +0.9
2,410,554 - IAI46_11425 0.64 -0.5
2,410,612 - IAI46_11425 0.71 +1.1
2,410,876 + -0.3
2,410,882 - IAI46_11430 0.11 +0.5
2,410,978 + IAI46_11430 0.30 +0.9
2,411,135 - IAI46_11430 0.61 -0.4
2,411,242 + IAI46_11430 0.82 +0.0
2,411,331 - +0.5
2,411,331 - +0.0
2,411,355 + +0.7
2,411,404 + +0.2
2,411,419 + -0.1
2,411,445 + +0.3
2,411,513 + +0.2
2,411,787 - IAI46_11435 0.27 -0.3
2,411,788 + IAI46_11435 0.27 -2.3
2,411,788 + IAI46_11435 0.27 -0.0
2,411,788 + IAI46_11435 0.27 -1.4
2,411,852 + IAI46_11435 0.32 +0.5
2,411,910 - IAI46_11435 0.37 +0.7
2,411,910 - IAI46_11435 0.37 +0.6
2,412,033 - IAI46_11435 0.47 +0.0
2,412,033 - IAI46_11435 0.47 -0.5
2,412,172 - IAI46_11435 0.59 +0.1
2,412,179 - IAI46_11435 0.59 +0.2
2,412,179 - IAI46_11435 0.59 -1.4
2,412,219 + IAI46_11435 0.63 +1.1
2,412,295 + IAI46_11435 0.69 +0.7
2,412,296 - IAI46_11435 0.69 +0.6
2,412,567 - -0.3
2,412,714 + +0.3
2,412,714 + +0.4
2,412,727 + +0.8
2,412,728 - -1.0
2,413,016 - IAI46_11440 0.43 -1.0
2,413,042 + IAI46_11440 0.47 -0.7
2,413,276 + IAI46_11440 0.89 +0.6
2,413,302 - +0.2
2,413,409 - +0.1
2,413,460 + +0.4

Or see this region's nucleotide sequence