Strain Fitness in Serratia liquefaciens MT49 around IAI46_10255

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10245 and IAI46_10250 are separated by 39 nucleotidesIAI46_10250 and IAI46_10255 are separated by 313 nucleotidesIAI46_10255 and IAI46_10260 are separated by 184 nucleotides IAI46_10245: IAI46_10245 - SulP family inorganic anion transporter, at 2,162,268 to 2,163,797 _10245 IAI46_10250: IAI46_10250 - aminoacyl-tRNA hydrolase, at 2,163,837 to 2,164,427 _10250 IAI46_10255: IAI46_10255 - stress-induced protein YchH, at 2,164,741 to 2,165,019 _10255 IAI46_10260: IAI46_10260 - ribose-phosphate diphosphokinase, at 2,165,204 to 2,166,151 _10260 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -1 0 1at 2163.796 kb on - strandat 2164.472 kb on - strandat 2164.584 kb on + strandat 2164.621 kb on - strandat 2164.667 kb on + strandat 2164.728 kb on - strandat 2164.887 kb on + strand, within IAI46_10255at 2164.916 kb on + strand, within IAI46_10255at 2164.917 kb on - strand, within IAI46_10255at 2165.079 kb on + strandat 2165.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,163,796 - -0.2
2,164,472 - -1.5
2,164,584 + +0.7
2,164,621 - +0.2
2,164,667 + -0.1
2,164,728 - -0.6
2,164,887 + IAI46_10255 0.52 +0.5
2,164,916 + IAI46_10255 0.63 +1.0
2,164,917 - IAI46_10255 0.63 +1.3
2,165,079 + +0.0
2,165,120 - +0.6

Or see this region's nucleotide sequence