Strain Fitness in Serratia liquefaciens MT49 around IAI46_09530

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_09520 and IAI46_09525 are separated by 67 nucleotidesIAI46_09525 and IAI46_09530 overlap by 14 nucleotidesIAI46_09530 and IAI46_09535 are separated by 219 nucleotides IAI46_09520: IAI46_09520 - membrane lipoprotein lipid attachment site-containing protein, at 2,023,124 to 2,023,819 _09520 IAI46_09525: IAI46_09525 - type II toxin-antitoxin system YafO family toxin, at 2,023,887 to 2,024,399 _09525 IAI46_09530: IAI46_09530 - hypothetical protein, at 2,024,386 to 2,024,700 _09530 IAI46_09535: IAI46_09535 - hypothetical protein, at 2,024,920 to 2,025,675 _09535 Position (kb) 2024 2025Strain fitness (log2 ratio) -1 0 1 2at 2023.387 kb on - strand, within IAI46_09520at 2023.414 kb on + strand, within IAI46_09520at 2023.417 kb on + strand, within IAI46_09520at 2023.420 kb on + strand, within IAI46_09520at 2023.459 kb on + strand, within IAI46_09520at 2023.460 kb on - strand, within IAI46_09520at 2023.475 kb on + strand, within IAI46_09520at 2023.475 kb on + strand, within IAI46_09520at 2023.476 kb on - strand, within IAI46_09520at 2023.492 kb on + strand, within IAI46_09520at 2023.492 kb on + strand, within IAI46_09520at 2023.493 kb on - strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.516 kb on + strand, within IAI46_09520at 2023.517 kb on - strand, within IAI46_09520at 2023.519 kb on + strand, within IAI46_09520at 2023.519 kb on + strand, within IAI46_09520at 2023.519 kb on + strand, within IAI46_09520at 2023.520 kb on - strand, within IAI46_09520at 2023.523 kb on - strand, within IAI46_09520at 2023.533 kb on - strand, within IAI46_09520at 2023.544 kb on + strand, within IAI46_09520at 2023.544 kb on + strand, within IAI46_09520at 2023.544 kb on + strand, within IAI46_09520at 2023.586 kb on + strand, within IAI46_09520at 2023.617 kb on - strand, within IAI46_09520at 2023.650 kb on + strand, within IAI46_09520at 2023.651 kb on - strand, within IAI46_09520at 2023.656 kb on + strand, within IAI46_09520at 2023.792 kb on + strandat 2023.808 kb on + strandat 2023.808 kb on + strandat 2023.820 kb on + strandat 2023.930 kb on - strandat 2023.969 kb on + strand, within IAI46_09525at 2023.989 kb on + strand, within IAI46_09525at 2023.994 kb on + strand, within IAI46_09525at 2024.089 kb on - strand, within IAI46_09525at 2024.089 kb on - strand, within IAI46_09525at 2024.093 kb on - strand, within IAI46_09525at 2024.093 kb on - strand, within IAI46_09525at 2024.100 kb on - strand, within IAI46_09525at 2024.181 kb on - strand, within IAI46_09525at 2024.211 kb on - strand, within IAI46_09525at 2024.382 kb on - strandat 2024.383 kb on + strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.765 kb on - strandat 2024.765 kb on - strandat 2024.765 kb on - strandat 2024.790 kb on - strandat 2024.835 kb on + strandat 2024.836 kb on - strandat 2024.892 kb on + strandat 2024.892 kb on + strandat 2024.892 kb on + strandat 2024.892 kb on + strandat 2024.893 kb on - strandat 2024.893 kb on - strandat 2024.893 kb on - strandat 2024.893 kb on - strandat 2024.893 kb on - strandat 2024.893 kb on - strandat 2024.922 kb on - strandat 2024.966 kb on - strandat 2024.966 kb on - strandat 2024.999 kb on + strand, within IAI46_09535at 2025.000 kb on - strand, within IAI46_09535at 2025.002 kb on + strand, within IAI46_09535at 2025.003 kb on - strand, within IAI46_09535at 2025.149 kb on + strand, within IAI46_09535at 2025.265 kb on - strand, within IAI46_09535at 2025.265 kb on - strand, within IAI46_09535at 2025.495 kb on - strand, within IAI46_09535at 2025.506 kb on - strand, within IAI46_09535at 2025.526 kb on + strand, within IAI46_09535at 2025.574 kb on + strand, within IAI46_09535at 2025.574 kb on + strand, within IAI46_09535at 2025.575 kb on - strand, within IAI46_09535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
2,023,387 - IAI46_09520 0.38 +0.2
2,023,414 + IAI46_09520 0.42 +1.2
2,023,417 + IAI46_09520 0.42 -0.2
2,023,420 + IAI46_09520 0.43 -0.1
2,023,459 + IAI46_09520 0.48 +0.9
2,023,460 - IAI46_09520 0.48 +1.1
2,023,475 + IAI46_09520 0.50 +0.2
2,023,475 + IAI46_09520 0.50 -0.1
2,023,476 - IAI46_09520 0.51 -1.3
2,023,492 + IAI46_09520 0.53 +0.4
2,023,492 + IAI46_09520 0.53 -0.0
2,023,493 - IAI46_09520 0.53 +0.2
2,023,496 + IAI46_09520 0.53 +0.4
2,023,496 + IAI46_09520 0.53 -0.5
2,023,496 + IAI46_09520 0.53 -1.2
2,023,496 + IAI46_09520 0.53 -0.0
2,023,496 + IAI46_09520 0.53 -1.2
2,023,496 + IAI46_09520 0.53 -0.4
2,023,496 + IAI46_09520 0.53 -0.4
2,023,496 + IAI46_09520 0.53 +0.3
2,023,496 + IAI46_09520 0.53 +0.3
2,023,516 + IAI46_09520 0.56 +0.5
2,023,517 - IAI46_09520 0.56 +0.9
2,023,519 + IAI46_09520 0.57 +0.8
2,023,519 + IAI46_09520 0.57 +0.9
2,023,519 + IAI46_09520 0.57 +0.1
2,023,520 - IAI46_09520 0.57 +0.6
2,023,523 - IAI46_09520 0.57 -0.2
2,023,533 - IAI46_09520 0.59 +2.3
2,023,544 + IAI46_09520 0.60 +1.1
2,023,544 + IAI46_09520 0.60 +0.2
2,023,544 + IAI46_09520 0.60 -0.7
2,023,586 + IAI46_09520 0.66 +0.7
2,023,617 - IAI46_09520 0.71 +0.5
2,023,650 + IAI46_09520 0.76 +0.2
2,023,651 - IAI46_09520 0.76 +1.3
2,023,656 + IAI46_09520 0.76 -0.8
2,023,792 + -0.6
2,023,808 + +0.5
2,023,808 + +1.2
2,023,820 + +1.5
2,023,930 - +0.8
2,023,969 + IAI46_09525 0.16 +1.1
2,023,989 + IAI46_09525 0.20 -0.1
2,023,994 + IAI46_09525 0.21 -0.1
2,024,089 - IAI46_09525 0.39 -0.6
2,024,089 - IAI46_09525 0.39 +0.3
2,024,093 - IAI46_09525 0.40 -0.5
2,024,093 - IAI46_09525 0.40 -0.1
2,024,100 - IAI46_09525 0.42 +0.8
2,024,181 - IAI46_09525 0.57 -0.8
2,024,211 - IAI46_09525 0.63 -0.2
2,024,382 - +0.9
2,024,383 + -0.2
2,024,384 - +0.4
2,024,384 - +0.4
2,024,384 - -0.8
2,024,384 - +1.1
2,024,384 - +1.3
2,024,765 - +0.9
2,024,765 - +0.9
2,024,765 - -0.7
2,024,790 - +0.1
2,024,835 + +0.5
2,024,836 - +1.7
2,024,892 + -0.0
2,024,892 + +1.8
2,024,892 + +1.3
2,024,892 + -0.3
2,024,893 - +0.3
2,024,893 - -1.1
2,024,893 - +0.3
2,024,893 - +0.5
2,024,893 - -0.2
2,024,893 - +1.8
2,024,922 - -0.8
2,024,966 - +0.3
2,024,966 - +0.6
2,024,999 + IAI46_09535 0.10 -0.3
2,025,000 - IAI46_09535 0.11 +0.8
2,025,002 + IAI46_09535 0.11 +0.2
2,025,003 - IAI46_09535 0.11 -1.1
2,025,149 + IAI46_09535 0.30 +2.1
2,025,265 - IAI46_09535 0.46 +0.3
2,025,265 - IAI46_09535 0.46 +0.2
2,025,495 - IAI46_09535 0.76 -0.7
2,025,506 - IAI46_09535 0.78 +0.1
2,025,526 + IAI46_09535 0.80 +0.8
2,025,574 + IAI46_09535 0.87 -0.1
2,025,574 + IAI46_09535 0.87 -0.5
2,025,575 - IAI46_09535 0.87 +0.5

Or see this region's nucleotide sequence