Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_09200 and IAI46_09205 are separated by 778 nucleotides IAI46_09205 and IAI46_09210 overlap by 8 nucleotides
IAI46_09200: IAI46_09200 - DUF2594 family protein, at 1,970,186 to 1,970,410
_09200
IAI46_09205: IAI46_09205 - UvrY/SirA/GacA family response regulator transcription factor, at 1,971,189 to 1,971,845
_09205
IAI46_09210: IAI46_09210 - excinuclease ABC subunit UvrC, at 1,971,838 to 1,973,670
_09210
Position (kb)
1971
1972 Strain fitness (log2 ratio)
-2
-1
0
1 at 1970.285 kb on - strand, within IAI46_09200 at 1970.345 kb on - strand, within IAI46_09200 at 1970.390 kb on - strand at 1970.390 kb on - strand at 1970.503 kb on + strand at 1970.522 kb on + strand at 1970.523 kb on - strand at 1970.525 kb on - strand at 1970.529 kb on + strand at 1970.529 kb on + strand at 1970.529 kb on + strand at 1970.530 kb on - strand at 1970.530 kb on - strand at 1970.530 kb on - strand at 1970.540 kb on + strand at 1970.566 kb on + strand at 1970.620 kb on + strand at 1970.621 kb on - strand at 1970.629 kb on + strand at 1970.629 kb on + strand at 1970.629 kb on + strand at 1970.630 kb on - strand at 1970.630 kb on - strand at 1970.717 kb on + strand at 1970.752 kb on - strand at 1970.762 kb on - strand at 1970.803 kb on - strand at 1970.934 kb on - strand at 1970.959 kb on - strand at 1970.991 kb on + strand at 1971.079 kb on + strand at 1971.090 kb on - strand at 1971.090 kb on - strand at 1971.128 kb on + strand at 1971.128 kb on + strand at 1971.128 kb on + strand at 1971.132 kb on - strand at 1971.141 kb on + strand at 1971.141 kb on + strand at 1971.141 kb on + strand at 1971.142 kb on - strand at 1971.143 kb on + strand at 1971.332 kb on - strand, within IAI46_09205 at 1971.335 kb on + strand, within IAI46_09205 at 1971.335 kb on + strand, within IAI46_09205 at 1971.335 kb on + strand, within IAI46_09205 at 1971.350 kb on + strand, within IAI46_09205 at 1971.558 kb on + strand, within IAI46_09205 at 1971.558 kb on + strand, within IAI46_09205 at 1971.560 kb on + strand, within IAI46_09205 at 1971.560 kb on + strand, within IAI46_09205 at 1971.560 kb on + strand, within IAI46_09205 at 1971.657 kb on - strand, within IAI46_09205 at 1971.657 kb on - strand, within IAI46_09205 at 1971.832 kb on + strand at 1971.899 kb on - strand at 1971.903 kb on + strand at 1971.903 kb on + strand at 1971.904 kb on - strand at 1971.904 kb on - strand at 1971.904 kb on - strand at 1971.904 kb on - strand at 1971.907 kb on + strand at 1971.907 kb on + strand at 1971.908 kb on - strand at 1971.908 kb on - strand at 1971.931 kb on + strand at 1971.931 kb on + strand at 1971.932 kb on - strand at 1972.035 kb on - strand, within IAI46_09210 at 1972.041 kb on - strand, within IAI46_09210 at 1972.054 kb on - strand, within IAI46_09210 at 1972.073 kb on + strand, within IAI46_09210 at 1972.083 kb on + strand, within IAI46_09210 at 1972.091 kb on + strand, within IAI46_09210 at 1972.113 kb on + strand, within IAI46_09210 at 1972.244 kb on - strand, within IAI46_09210 at 1972.417 kb on + strand, within IAI46_09210 at 1972.454 kb on + strand, within IAI46_09210 at 1972.457 kb on + strand, within IAI46_09210 at 1972.458 kb on - strand, within IAI46_09210 at 1972.664 kb on + strand, within IAI46_09210 at 1972.747 kb on + strand, within IAI46_09210 at 1972.747 kb on + strand, within IAI46_09210 at 1972.751 kb on + strand, within IAI46_09210 at 1972.790 kb on + strand, within IAI46_09210
Per-strain Table
Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic remove 1,970,285 - IAI46_09200 0.44 +0.7 1,970,345 - IAI46_09200 0.71 -0.5 1,970,390 - +0.1 1,970,390 - -1.4 1,970,503 + -0.4 1,970,522 + +1.2 1,970,523 - +0.8 1,970,525 - -0.1 1,970,529 + +0.4 1,970,529 + +1.1 1,970,529 + +1.6 1,970,530 - +1.5 1,970,530 - +0.8 1,970,530 - +0.6 1,970,540 + +0.1 1,970,566 + -0.7 1,970,620 + -0.4 1,970,621 - -0.9 1,970,629 + +0.3 1,970,629 + +0.1 1,970,629 + +0.3 1,970,630 - -0.4 1,970,630 - -0.9 1,970,717 + +0.8 1,970,752 - +0.3 1,970,762 - +0.1 1,970,803 - +0.4 1,970,934 - -0.7 1,970,959 - +0.9 1,970,991 + +0.0 1,971,079 + -2.0 1,971,090 - +0.1 1,971,090 - +1.1 1,971,128 + +0.3 1,971,128 + +0.1 1,971,128 + +1.1 1,971,132 - -0.3 1,971,141 + -0.6 1,971,141 + +0.1 1,971,141 + -0.2 1,971,142 - +0.4 1,971,143 + +1.0 1,971,332 - IAI46_09205 0.22 +0.6 1,971,335 + IAI46_09205 0.22 -0.8 1,971,335 + IAI46_09205 0.22 -0.0 1,971,335 + IAI46_09205 0.22 -0.8 1,971,350 + IAI46_09205 0.25 +0.2 1,971,558 + IAI46_09205 0.56 +0.2 1,971,558 + IAI46_09205 0.56 +1.2 1,971,560 + IAI46_09205 0.56 +0.1 1,971,560 + IAI46_09205 0.56 +0.4 1,971,560 + IAI46_09205 0.56 -0.1 1,971,657 - IAI46_09205 0.71 -0.1 1,971,657 - IAI46_09205 0.71 +0.9 1,971,832 + +0.2 1,971,899 - -0.8 1,971,903 + +0.2 1,971,903 + +0.4 1,971,904 - +0.1 1,971,904 - -0.5 1,971,904 - +1.6 1,971,904 - -0.4 1,971,907 + +0.2 1,971,907 + +0.6 1,971,908 - -1.0 1,971,908 - -0.1 1,971,931 + -0.2 1,971,931 + +0.4 1,971,932 - -0.7 1,972,035 - IAI46_09210 0.11 -0.4 1,972,041 - IAI46_09210 0.11 -0.8 1,972,054 - IAI46_09210 0.12 +1.0 1,972,073 + IAI46_09210 0.13 -0.9 1,972,083 + IAI46_09210 0.13 -0.0 1,972,091 + IAI46_09210 0.14 +0.2 1,972,113 + IAI46_09210 0.15 +0.2 1,972,244 - IAI46_09210 0.22 -0.4 1,972,417 + IAI46_09210 0.32 +1.0 1,972,454 + IAI46_09210 0.34 +0.7 1,972,457 + IAI46_09210 0.34 +0.2 1,972,458 - IAI46_09210 0.34 -0.5 1,972,664 + IAI46_09210 0.45 -0.8 1,972,747 + IAI46_09210 0.50 -0.3 1,972,747 + IAI46_09210 0.50 +0.7 1,972,751 + IAI46_09210 0.50 -0.3 1,972,790 + IAI46_09210 0.52 +0.1
Or see this region's nucleotide sequence