Strain Fitness in Serratia liquefaciens MT49 around IAI46_08740

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_08735 and IAI46_08740 are separated by 181 nucleotidesIAI46_08740 and IAI46_08745 are separated by 66 nucleotidesIAI46_08745 and IAI46_08750 are separated by 70 nucleotides IAI46_08735: IAI46_08735 - L,D-transpeptidase, at 1,870,391 to 1,872,232 _08735 IAI46_08740: IAI46_08740 - YcbK family protein, at 1,872,414 to 1,872,962 _08740 IAI46_08745: IAI46_08745 - MBL fold metallo-hydrolase, at 1,873,029 to 1,873,676 _08745 IAI46_08750: IAI46_08750 - aspartate/tyrosine/aromatic aminotransferase, at 1,873,747 to 1,874,937 _08750 Position (kb) 1872 1873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1871.512 kb on + strand, within IAI46_08735at 1871.532 kb on - strand, within IAI46_08735at 1871.543 kb on + strand, within IAI46_08735at 1871.546 kb on + strand, within IAI46_08735at 1871.587 kb on - strand, within IAI46_08735at 1871.640 kb on + strand, within IAI46_08735at 1871.641 kb on - strand, within IAI46_08735at 1871.644 kb on + strand, within IAI46_08735at 1871.717 kb on + strand, within IAI46_08735at 1871.718 kb on - strand, within IAI46_08735at 1871.735 kb on + strand, within IAI46_08735at 1871.735 kb on + strand, within IAI46_08735at 1871.736 kb on - strand, within IAI46_08735at 1871.737 kb on + strand, within IAI46_08735at 1871.738 kb on - strand, within IAI46_08735at 1871.926 kb on + strand, within IAI46_08735at 1871.927 kb on - strand, within IAI46_08735at 1872.001 kb on + strand, within IAI46_08735at 1872.002 kb on - strand, within IAI46_08735at 1872.052 kb on - strandat 1872.064 kb on + strandat 1872.064 kb on + strandat 1872.065 kb on - strandat 1872.065 kb on - strandat 1872.071 kb on + strandat 1872.071 kb on + strandat 1872.072 kb on - strandat 1872.110 kb on + strandat 1872.110 kb on + strandat 1872.111 kb on - strandat 1872.171 kb on - strandat 1872.179 kb on - strandat 1872.231 kb on - strandat 1872.243 kb on + strandat 1872.253 kb on + strandat 1872.381 kb on + strandat 1872.527 kb on + strand, within IAI46_08740at 1872.542 kb on + strand, within IAI46_08740at 1872.542 kb on + strand, within IAI46_08740at 1872.546 kb on - strand, within IAI46_08740at 1872.546 kb on - strand, within IAI46_08740at 1872.546 kb on - strand, within IAI46_08740at 1872.546 kb on - strand, within IAI46_08740at 1872.551 kb on + strand, within IAI46_08740at 1872.596 kb on + strand, within IAI46_08740at 1872.596 kb on + strand, within IAI46_08740at 1872.597 kb on - strand, within IAI46_08740at 1872.597 kb on - strand, within IAI46_08740at 1872.597 kb on - strand, within IAI46_08740at 1872.650 kb on + strand, within IAI46_08740at 1872.651 kb on - strand, within IAI46_08740at 1872.676 kb on + strand, within IAI46_08740at 1872.727 kb on + strand, within IAI46_08740at 1872.812 kb on + strand, within IAI46_08740at 1872.917 kb on + strandat 1872.917 kb on + strandat 1872.960 kb on + strandat 1872.961 kb on - strandat 1873.044 kb on - strandat 1873.213 kb on + strand, within IAI46_08745at 1873.214 kb on - strand, within IAI46_08745at 1873.242 kb on + strand, within IAI46_08745at 1873.243 kb on - strand, within IAI46_08745at 1873.249 kb on + strand, within IAI46_08745at 1873.257 kb on + strand, within IAI46_08745at 1873.424 kb on + strand, within IAI46_08745at 1873.424 kb on + strand, within IAI46_08745at 1873.424 kb on + strand, within IAI46_08745at 1873.425 kb on - strand, within IAI46_08745at 1873.436 kb on + strand, within IAI46_08745at 1873.436 kb on + strand, within IAI46_08745at 1873.445 kb on + strand, within IAI46_08745at 1873.448 kb on + strand, within IAI46_08745at 1873.616 kb on + strandat 1873.616 kb on + strandat 1873.617 kb on - strandat 1873.680 kb on + strandat 1873.681 kb on - strandat 1873.918 kb on - strand, within IAI46_08750at 1873.957 kb on - strand, within IAI46_08750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
1,871,512 + IAI46_08735 0.61 +0.1
1,871,532 - IAI46_08735 0.62 -0.6
1,871,543 + IAI46_08735 0.63 +0.4
1,871,546 + IAI46_08735 0.63 +0.6
1,871,587 - IAI46_08735 0.65 +0.1
1,871,640 + IAI46_08735 0.68 +0.6
1,871,641 - IAI46_08735 0.68 -2.3
1,871,644 + IAI46_08735 0.68 -1.7
1,871,717 + IAI46_08735 0.72 -0.2
1,871,718 - IAI46_08735 0.72 +0.1
1,871,735 + IAI46_08735 0.73 +0.5
1,871,735 + IAI46_08735 0.73 +1.7
1,871,736 - IAI46_08735 0.73 -0.3
1,871,737 + IAI46_08735 0.73 +0.4
1,871,738 - IAI46_08735 0.73 +0.3
1,871,926 + IAI46_08735 0.83 +1.2
1,871,927 - IAI46_08735 0.83 +0.6
1,872,001 + IAI46_08735 0.87 -0.1
1,872,002 - IAI46_08735 0.87 +0.3
1,872,052 - -0.3
1,872,064 + -0.1
1,872,064 + +0.7
1,872,065 - -0.3
1,872,065 - +0.5
1,872,071 + +0.5
1,872,071 + -1.3
1,872,072 - -2.9
1,872,110 + -1.0
1,872,110 + -0.0
1,872,111 - -0.7
1,872,171 - -0.2
1,872,179 - -0.6
1,872,231 - -0.6
1,872,243 + +0.0
1,872,253 + -0.5
1,872,381 + +1.3
1,872,527 + IAI46_08740 0.21 +0.1
1,872,542 + IAI46_08740 0.23 +1.4
1,872,542 + IAI46_08740 0.23 +1.4
1,872,546 - IAI46_08740 0.24 -0.0
1,872,546 - IAI46_08740 0.24 +0.4
1,872,546 - IAI46_08740 0.24 -0.3
1,872,546 - IAI46_08740 0.24 -0.1
1,872,551 + IAI46_08740 0.25 +0.4
1,872,596 + IAI46_08740 0.33 +2.2
1,872,596 + IAI46_08740 0.33 -1.8
1,872,597 - IAI46_08740 0.33 +1.6
1,872,597 - IAI46_08740 0.33 +0.2
1,872,597 - IAI46_08740 0.33 +0.3
1,872,650 + IAI46_08740 0.43 +0.1
1,872,651 - IAI46_08740 0.43 -0.8
1,872,676 + IAI46_08740 0.48 +0.0
1,872,727 + IAI46_08740 0.57 -0.5
1,872,812 + IAI46_08740 0.72 +1.3
1,872,917 + +0.6
1,872,917 + +0.3
1,872,960 + +0.3
1,872,961 - -0.6
1,873,044 - -0.7
1,873,213 + IAI46_08745 0.28 +0.5
1,873,214 - IAI46_08745 0.29 +0.1
1,873,242 + IAI46_08745 0.33 -0.1
1,873,243 - IAI46_08745 0.33 +1.2
1,873,249 + IAI46_08745 0.34 -0.5
1,873,257 + IAI46_08745 0.35 +0.3
1,873,424 + IAI46_08745 0.61 +0.5
1,873,424 + IAI46_08745 0.61 +0.1
1,873,424 + IAI46_08745 0.61 -0.1
1,873,425 - IAI46_08745 0.61 -0.7
1,873,436 + IAI46_08745 0.63 -0.1
1,873,436 + IAI46_08745 0.63 +0.4
1,873,445 + IAI46_08745 0.64 -0.3
1,873,448 + IAI46_08745 0.65 -0.7
1,873,616 + -1.1
1,873,616 + +0.8
1,873,617 - -0.3
1,873,680 + -0.4
1,873,681 - -0.2
1,873,918 - IAI46_08750 0.14 -1.0
1,873,957 - IAI46_08750 0.18 -0.3

Or see this region's nucleotide sequence