Strain Fitness in Serratia liquefaciens MT49 around IAI46_08550

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_08545 and IAI46_08550 are separated by 80 nucleotidesIAI46_08550 and IAI46_08555 are separated by 660 nucleotides IAI46_08545: IAI46_08545 - LysR family transcriptional regulator, at 1,819,967 to 1,820,881 _08545 IAI46_08550: IAI46_08550 - thioredoxin-disulfide reductase, at 1,820,962 to 1,821,933 _08550 IAI46_08555: IAI46_08555 - leucine-responsive transcriptional regulator Lrp, at 1,822,594 to 1,823,088 _08555 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -1 0 1at 1820.000 kb on - strandat 1820.028 kb on - strandat 1820.339 kb on + strand, within IAI46_08545at 1820.366 kb on - strand, within IAI46_08545at 1820.393 kb on + strand, within IAI46_08545at 1820.393 kb on + strand, within IAI46_08545at 1820.393 kb on + strand, within IAI46_08545at 1820.394 kb on - strand, within IAI46_08545at 1820.394 kb on - strand, within IAI46_08545at 1820.445 kb on - strand, within IAI46_08545at 1820.561 kb on + strand, within IAI46_08545at 1820.562 kb on - strand, within IAI46_08545at 1820.562 kb on - strand, within IAI46_08545at 1820.910 kb on - strandat 1820.964 kb on - strandat 1821.022 kb on - strandat 1821.210 kb on + strand, within IAI46_08550at 1821.211 kb on - strand, within IAI46_08550at 1821.211 kb on - strand, within IAI46_08550at 1821.214 kb on + strand, within IAI46_08550at 1821.215 kb on - strand, within IAI46_08550at 1821.215 kb on - strand, within IAI46_08550at 1821.255 kb on + strand, within IAI46_08550at 1821.444 kb on - strand, within IAI46_08550at 1821.444 kb on - strand, within IAI46_08550at 1821.444 kb on - strand, within IAI46_08550at 1821.444 kb on - strand, within IAI46_08550at 1821.458 kb on - strand, within IAI46_08550at 1821.466 kb on - strand, within IAI46_08550at 1821.478 kb on + strand, within IAI46_08550at 1821.624 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.682 kb on - strand, within IAI46_08550at 1821.730 kb on - strand, within IAI46_08550at 1821.730 kb on - strand, within IAI46_08550at 1821.730 kb on - strand, within IAI46_08550at 1821.878 kb on + strandat 1821.879 kb on - strandat 1821.879 kb on - strandat 1821.907 kb on + strandat 1822.092 kb on + strandat 1822.097 kb on + strandat 1822.160 kb on - strandat 1822.199 kb on - strandat 1822.203 kb on - strandat 1822.217 kb on - strandat 1822.232 kb on + strandat 1822.294 kb on + strandat 1822.295 kb on - strandat 1822.325 kb on + strandat 1822.432 kb on + strandat 1822.495 kb on + strandat 1822.532 kb on + strandat 1822.590 kb on - strandat 1822.590 kb on - strandat 1822.592 kb on + strandat 1822.606 kb on - strandat 1822.677 kb on + strand, within IAI46_08555at 1822.677 kb on + strand, within IAI46_08555at 1822.677 kb on + strand, within IAI46_08555at 1822.730 kb on + strand, within IAI46_08555at 1822.731 kb on - strand, within IAI46_08555at 1822.798 kb on + strand, within IAI46_08555at 1822.798 kb on + strand, within IAI46_08555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
1,820,000 - +0.3
1,820,028 - +1.1
1,820,339 + IAI46_08545 0.41 +1.5
1,820,366 - IAI46_08545 0.44 +1.2
1,820,393 + IAI46_08545 0.47 -0.6
1,820,393 + IAI46_08545 0.47 -0.1
1,820,393 + IAI46_08545 0.47 -0.8
1,820,394 - IAI46_08545 0.47 +0.0
1,820,394 - IAI46_08545 0.47 -0.8
1,820,445 - IAI46_08545 0.52 +1.0
1,820,561 + IAI46_08545 0.65 -1.1
1,820,562 - IAI46_08545 0.65 +0.3
1,820,562 - IAI46_08545 0.65 +0.0
1,820,910 - +1.3
1,820,964 - +0.7
1,821,022 - +0.7
1,821,210 + IAI46_08550 0.26 +0.4
1,821,211 - IAI46_08550 0.26 +1.3
1,821,211 - IAI46_08550 0.26 +1.1
1,821,214 + IAI46_08550 0.26 -0.3
1,821,215 - IAI46_08550 0.26 -0.8
1,821,215 - IAI46_08550 0.26 -0.7
1,821,255 + IAI46_08550 0.30 +1.2
1,821,444 - IAI46_08550 0.50 -0.3
1,821,444 - IAI46_08550 0.50 -0.3
1,821,444 - IAI46_08550 0.50 -0.3
1,821,444 - IAI46_08550 0.50 +0.5
1,821,458 - IAI46_08550 0.51 -0.1
1,821,466 - IAI46_08550 0.52 +0.5
1,821,478 + IAI46_08550 0.53 -1.3
1,821,624 - IAI46_08550 0.68 +0.4
1,821,682 - IAI46_08550 0.74 -0.6
1,821,682 - IAI46_08550 0.74 -1.0
1,821,682 - IAI46_08550 0.74 -0.3
1,821,682 - IAI46_08550 0.74 -0.8
1,821,730 - IAI46_08550 0.79 -0.8
1,821,730 - IAI46_08550 0.79 +1.0
1,821,730 - IAI46_08550 0.79 +0.7
1,821,878 + -1.3
1,821,879 - -0.4
1,821,879 - +0.6
1,821,907 + -1.1
1,822,092 + -0.7
1,822,097 + -0.0
1,822,160 - +0.5
1,822,199 - +0.7
1,822,203 - +0.7
1,822,217 - +0.6
1,822,232 + +0.3
1,822,294 + +0.0
1,822,295 - +0.2
1,822,325 + -0.1
1,822,432 + -0.4
1,822,495 + +0.2
1,822,532 + +0.7
1,822,590 - -1.1
1,822,590 - -0.8
1,822,592 + -1.5
1,822,606 - +0.3
1,822,677 + IAI46_08555 0.17 +0.1
1,822,677 + IAI46_08555 0.17 +0.0
1,822,677 + IAI46_08555 0.17 -0.5
1,822,730 + IAI46_08555 0.27 -0.5
1,822,731 - IAI46_08555 0.28 -0.8
1,822,798 + IAI46_08555 0.41 -0.7
1,822,798 + IAI46_08555 0.41 -0.5

Or see this region's nucleotide sequence