Strain Fitness in Serratia liquefaciens MT49 around IAI46_08530

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08520 and IAI46_08525 are separated by 106 nucleotidesIAI46_08525 and IAI46_08530 are separated by 30 nucleotidesIAI46_08530 and IAI46_08535 are separated by 2 nucleotides IAI46_08520: IAI46_08520 - translation initiation factor IF-1, at 1,814,515 to 1,814,733 _08520 IAI46_08525: IAI46_08525 - leucyl/phenylalanyl-tRNA--protein transferase, at 1,814,840 to 1,815,565 _08525 IAI46_08530: IAI46_08530 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 1,815,596 to 1,817,332 _08530 IAI46_08535: IAI46_08535 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 1,817,335 to 1,819,101 _08535 Position (kb) 1815 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1at 1814.996 kb on - strand, within IAI46_08525at 1815.027 kb on + strand, within IAI46_08525at 1815.088 kb on + strand, within IAI46_08525at 1815.347 kb on - strand, within IAI46_08525at 1815.441 kb on + strand, within IAI46_08525at 1815.441 kb on + strand, within IAI46_08525at 1815.442 kb on - strand, within IAI46_08525at 1815.452 kb on + strand, within IAI46_08525at 1815.553 kb on + strandat 1815.553 kb on + strandat 1815.554 kb on - strandat 1815.554 kb on - strandat 1815.554 kb on - strandat 1815.565 kb on + strandat 1815.566 kb on - strandat 1815.567 kb on + strandat 1815.567 kb on + strandat 1815.567 kb on + strandat 1815.567 kb on + strandat 1815.568 kb on - strandat 1815.568 kb on - strandat 1815.586 kb on - strandat 1815.586 kb on - strandat 1815.605 kb on + strandat 1815.605 kb on + strandat 1815.617 kb on - strandat 1815.732 kb on + strandat 1816.054 kb on + strand, within IAI46_08530at 1816.228 kb on + strand, within IAI46_08530at 1816.229 kb on - strand, within IAI46_08530at 1816.291 kb on - strand, within IAI46_08530at 1816.295 kb on - strand, within IAI46_08530at 1816.688 kb on + strand, within IAI46_08530at 1816.689 kb on - strand, within IAI46_08530at 1816.932 kb on + strand, within IAI46_08530at 1816.932 kb on + strand, within IAI46_08530at 1816.933 kb on - strand, within IAI46_08530at 1817.158 kb on - strand, within IAI46_08530at 1817.158 kb on - strand, within IAI46_08530at 1817.301 kb on + strandat 1817.337 kb on - strandat 1817.338 kb on + strandat 1817.338 kb on + strandat 1817.339 kb on - strandat 1817.339 kb on - strandat 1817.714 kb on + strand, within IAI46_08535at 1817.714 kb on + strand, within IAI46_08535at 1817.715 kb on - strand, within IAI46_08535at 1817.773 kb on + strand, within IAI46_08535at 1817.773 kb on + strand, within IAI46_08535at 1818.260 kb on + strand, within IAI46_08535at 1818.302 kb on + strand, within IAI46_08535

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,814,996 - IAI46_08525 0.21 -0.7
1,815,027 + IAI46_08525 0.26 +0.6
1,815,088 + IAI46_08525 0.34 -0.2
1,815,347 - IAI46_08525 0.70 +0.0
1,815,441 + IAI46_08525 0.83 +0.4
1,815,441 + IAI46_08525 0.83 +0.2
1,815,442 - IAI46_08525 0.83 -0.0
1,815,452 + IAI46_08525 0.84 -0.2
1,815,553 + -0.2
1,815,553 + -2.7
1,815,554 - -2.3
1,815,554 - +0.1
1,815,554 - -0.1
1,815,565 + -0.6
1,815,566 - +0.3
1,815,567 + -0.9
1,815,567 + -1.2
1,815,567 + +0.4
1,815,567 + -0.0
1,815,568 - +0.2
1,815,568 - -0.2
1,815,586 - +0.4
1,815,586 - +0.7
1,815,605 + -0.5
1,815,605 + -0.7
1,815,617 - -0.6
1,815,732 + +0.4
1,816,054 + IAI46_08530 0.26 +0.7
1,816,228 + IAI46_08530 0.36 +1.7
1,816,229 - IAI46_08530 0.36 -0.6
1,816,291 - IAI46_08530 0.40 -0.3
1,816,295 - IAI46_08530 0.40 +1.0
1,816,688 + IAI46_08530 0.63 -0.1
1,816,689 - IAI46_08530 0.63 +0.5
1,816,932 + IAI46_08530 0.77 +1.1
1,816,932 + IAI46_08530 0.77 -0.3
1,816,933 - IAI46_08530 0.77 +1.2
1,817,158 - IAI46_08530 0.90 -0.1
1,817,158 - IAI46_08530 0.90 +1.0
1,817,301 + +0.9
1,817,337 - -0.1
1,817,338 + -1.7
1,817,338 + -0.6
1,817,339 - -0.3
1,817,339 - -0.0
1,817,714 + IAI46_08535 0.21 -0.8
1,817,714 + IAI46_08535 0.21 +0.2
1,817,715 - IAI46_08535 0.22 +0.4
1,817,773 + IAI46_08535 0.25 +0.2
1,817,773 + IAI46_08535 0.25 -0.1
1,818,260 + IAI46_08535 0.52 +1.0
1,818,302 + IAI46_08535 0.55 -1.0

Or see this region's nucleotide sequence