Strain Fitness in Serratia liquefaciens MT49 around IAI46_08410

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08400 and IAI46_08405 are separated by 207 nucleotidesIAI46_08405 and IAI46_08410 overlap by 1 nucleotidesIAI46_08410 and IAI46_08415 are separated by 9 nucleotidesIAI46_08415 and IAI46_08420 are separated by 33 nucleotides IAI46_08400: IAI46_08400 - arginine ABC transporter substrate-binding protein, at 1,787,236 to 1,787,970 _08400 IAI46_08405: IAI46_08405 - arginine ABC transporter permease ArtM, at 1,788,178 to 1,788,846 _08405 IAI46_08410: IAI46_08410 - arginine ABC transporter permease ArtQ, at 1,788,846 to 1,789,562 _08410 IAI46_08415: IAI46_08415 - arginine ABC transporter substrate-binding protein, at 1,789,572 to 1,790,303 _08415 IAI46_08420: IAI46_08420 - arginine ABC transporter ATP-binding protein ArtP, at 1,790,337 to 1,791,065 _08420 Position (kb) 1788 1789 1790Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1787.876 kb on + strand, within IAI46_08400at 1787.877 kb on - strand, within IAI46_08400at 1788.083 kb on - strandat 1788.091 kb on - strandat 1788.103 kb on - strandat 1788.257 kb on + strand, within IAI46_08405at 1788.258 kb on - strand, within IAI46_08405at 1788.293 kb on + strand, within IAI46_08405at 1788.294 kb on - strand, within IAI46_08405at 1788.298 kb on - strand, within IAI46_08405at 1788.305 kb on + strand, within IAI46_08405at 1788.306 kb on - strand, within IAI46_08405at 1788.306 kb on - strand, within IAI46_08405at 1788.306 kb on - strand, within IAI46_08405at 1788.343 kb on - strand, within IAI46_08405at 1788.351 kb on - strand, within IAI46_08405at 1788.395 kb on + strand, within IAI46_08405at 1788.435 kb on + strand, within IAI46_08405at 1788.534 kb on - strand, within IAI46_08405at 1788.641 kb on + strand, within IAI46_08405at 1788.645 kb on - strand, within IAI46_08405at 1788.676 kb on - strand, within IAI46_08405at 1788.696 kb on - strand, within IAI46_08405at 1788.901 kb on + strandat 1788.928 kb on + strand, within IAI46_08410at 1788.929 kb on - strand, within IAI46_08410at 1788.929 kb on - strand, within IAI46_08410at 1788.949 kb on + strand, within IAI46_08410at 1788.950 kb on - strand, within IAI46_08410at 1788.950 kb on - strand, within IAI46_08410at 1789.047 kb on + strand, within IAI46_08410at 1789.210 kb on + strand, within IAI46_08410at 1789.219 kb on + strand, within IAI46_08410at 1789.219 kb on + strand, within IAI46_08410at 1789.220 kb on - strand, within IAI46_08410at 1789.240 kb on - strand, within IAI46_08410at 1789.543 kb on - strandat 1789.568 kb on + strandat 1789.569 kb on - strandat 1789.573 kb on + strandat 1789.574 kb on - strandat 1789.705 kb on + strand, within IAI46_08415at 1789.706 kb on - strand, within IAI46_08415at 1789.725 kb on - strand, within IAI46_08415at 1789.792 kb on - strand, within IAI46_08415at 1789.837 kb on + strand, within IAI46_08415at 1789.993 kb on + strand, within IAI46_08415at 1789.994 kb on - strand, within IAI46_08415at 1789.994 kb on - strand, within IAI46_08415at 1789.994 kb on - strand, within IAI46_08415at 1789.994 kb on - strand, within IAI46_08415at 1790.082 kb on - strand, within IAI46_08415at 1790.321 kb on - strandat 1790.409 kb on + strandat 1790.410 kb on - strand, within IAI46_08420at 1790.410 kb on - strand, within IAI46_08420at 1790.410 kb on - strand, within IAI46_08420

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,787,876 + IAI46_08400 0.87 -1.7
1,787,877 - IAI46_08400 0.87 +1.1
1,788,083 - -1.1
1,788,091 - -0.7
1,788,103 - +0.8
1,788,257 + IAI46_08405 0.12 -0.5
1,788,258 - IAI46_08405 0.12 +0.2
1,788,293 + IAI46_08405 0.17 -0.2
1,788,294 - IAI46_08405 0.17 -0.0
1,788,298 - IAI46_08405 0.18 -0.5
1,788,305 + IAI46_08405 0.19 -0.6
1,788,306 - IAI46_08405 0.19 -0.8
1,788,306 - IAI46_08405 0.19 +0.8
1,788,306 - IAI46_08405 0.19 -0.0
1,788,343 - IAI46_08405 0.25 +0.3
1,788,351 - IAI46_08405 0.26 +0.7
1,788,395 + IAI46_08405 0.32 -1.3
1,788,435 + IAI46_08405 0.38 -1.2
1,788,534 - IAI46_08405 0.53 -0.2
1,788,641 + IAI46_08405 0.69 +0.0
1,788,645 - IAI46_08405 0.70 -0.5
1,788,676 - IAI46_08405 0.74 +0.7
1,788,696 - IAI46_08405 0.77 -0.1
1,788,901 + +0.7
1,788,928 + IAI46_08410 0.11 -0.2
1,788,929 - IAI46_08410 0.12 +0.9
1,788,929 - IAI46_08410 0.12 +0.6
1,788,949 + IAI46_08410 0.14 -0.1
1,788,950 - IAI46_08410 0.15 -0.4
1,788,950 - IAI46_08410 0.15 +0.0
1,789,047 + IAI46_08410 0.28 -0.1
1,789,210 + IAI46_08410 0.51 +0.8
1,789,219 + IAI46_08410 0.52 -0.7
1,789,219 + IAI46_08410 0.52 -0.1
1,789,220 - IAI46_08410 0.52 -0.9
1,789,240 - IAI46_08410 0.55 -0.5
1,789,543 - +3.1
1,789,568 + +0.7
1,789,569 - +0.2
1,789,573 + +0.6
1,789,574 - +1.5
1,789,705 + IAI46_08415 0.18 -2.3
1,789,706 - IAI46_08415 0.18 -0.4
1,789,725 - IAI46_08415 0.21 +0.1
1,789,792 - IAI46_08415 0.30 +0.3
1,789,837 + IAI46_08415 0.36 +0.2
1,789,993 + IAI46_08415 0.58 +0.4
1,789,994 - IAI46_08415 0.58 -1.7
1,789,994 - IAI46_08415 0.58 -0.2
1,789,994 - IAI46_08415 0.58 +0.6
1,789,994 - IAI46_08415 0.58 +0.5
1,790,082 - IAI46_08415 0.70 -0.5
1,790,321 - +1.5
1,790,409 + -0.7
1,790,410 - IAI46_08420 0.10 -0.4
1,790,410 - IAI46_08420 0.10 -1.4
1,790,410 - IAI46_08420 0.10 +0.7

Or see this region's nucleotide sequence