Strain Fitness in Serratia liquefaciens MT49 around IAI46_07500

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_07495 and IAI46_07500 are separated by 62 nucleotidesIAI46_07500 and IAI46_07505 are separated by 165 nucleotidesIAI46_07505 and IAI46_07510 are separated by 119 nucleotides IAI46_07495: IAI46_07495 - peptidase M3, at 1,583,772 to 1,585,628 _07495 IAI46_07500: IAI46_07500 - DUF1471 domain-containing protein, at 1,585,691 to 1,585,948 _07500 IAI46_07505: IAI46_07505 - flavin reductase family protein, at 1,586,114 to 1,586,752 _07505 IAI46_07510: IAI46_07510 - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 1,586,872 to 1,587,837 _07510 Position (kb) 1585 1586Strain fitness (log2 ratio) -1 0 1 2at 1584.699 kb on - strand, within IAI46_07495at 1584.738 kb on - strand, within IAI46_07495at 1584.784 kb on + strand, within IAI46_07495at 1584.784 kb on + strand, within IAI46_07495at 1584.788 kb on + strand, within IAI46_07495at 1584.788 kb on + strand, within IAI46_07495at 1584.831 kb on - strand, within IAI46_07495at 1584.983 kb on + strand, within IAI46_07495at 1584.983 kb on + strand, within IAI46_07495at 1585.043 kb on + strand, within IAI46_07495at 1585.043 kb on + strand, within IAI46_07495at 1585.043 kb on + strand, within IAI46_07495at 1585.044 kb on - strand, within IAI46_07495at 1585.059 kb on + strand, within IAI46_07495at 1585.078 kb on - strand, within IAI46_07495at 1585.148 kb on - strand, within IAI46_07495at 1585.230 kb on + strand, within IAI46_07495at 1585.230 kb on + strand, within IAI46_07495at 1585.472 kb on - strandat 1585.472 kb on - strandat 1585.680 kb on + strandat 1585.698 kb on + strandat 1585.698 kb on + strandat 1585.744 kb on + strand, within IAI46_07500at 1585.744 kb on + strand, within IAI46_07500at 1585.745 kb on - strand, within IAI46_07500at 1586.172 kb on + strandat 1586.175 kb on + strandat 1586.175 kb on + strandat 1586.175 kb on + strandat 1586.175 kb on + strandat 1586.176 kb on - strandat 1586.176 kb on - strandat 1586.176 kb on - strandat 1586.226 kb on + strand, within IAI46_07505at 1586.264 kb on + strand, within IAI46_07505at 1586.264 kb on + strand, within IAI46_07505at 1586.264 kb on + strand, within IAI46_07505at 1586.265 kb on - strand, within IAI46_07505at 1586.265 kb on - strand, within IAI46_07505at 1586.265 kb on - strand, within IAI46_07505at 1586.611 kb on - strand, within IAI46_07505at 1586.611 kb on - strand, within IAI46_07505at 1586.727 kb on + strandat 1586.727 kb on + strandat 1586.728 kb on - strandat 1586.730 kb on + strandat 1586.753 kb on - strandat 1586.753 kb on - strandat 1586.753 kb on - strandat 1586.770 kb on + strandat 1586.784 kb on - strandat 1586.827 kb on - strandat 1586.831 kb on + strandat 1586.831 kb on + strandat 1586.831 kb on + strandat 1586.850 kb on - strandat 1586.855 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
1,584,699 - IAI46_07495 0.50 -0.4
1,584,738 - IAI46_07495 0.52 +0.5
1,584,784 + IAI46_07495 0.54 +0.2
1,584,784 + IAI46_07495 0.54 +0.2
1,584,788 + IAI46_07495 0.55 +0.4
1,584,788 + IAI46_07495 0.55 -0.4
1,584,831 - IAI46_07495 0.57 +1.2
1,584,983 + IAI46_07495 0.65 +0.5
1,584,983 + IAI46_07495 0.65 +0.2
1,585,043 + IAI46_07495 0.68 -0.7
1,585,043 + IAI46_07495 0.68 +0.8
1,585,043 + IAI46_07495 0.68 -0.3
1,585,044 - IAI46_07495 0.68 +0.7
1,585,059 + IAI46_07495 0.69 -0.3
1,585,078 - IAI46_07495 0.70 +0.7
1,585,148 - IAI46_07495 0.74 -0.2
1,585,230 + IAI46_07495 0.79 +1.4
1,585,230 + IAI46_07495 0.79 +1.8
1,585,472 - +0.5
1,585,472 - +0.1
1,585,680 + +0.4
1,585,698 + -0.7
1,585,698 + +0.4
1,585,744 + IAI46_07500 0.21 +0.5
1,585,744 + IAI46_07500 0.21 +0.2
1,585,745 - IAI46_07500 0.21 -1.4
1,586,172 + -0.4
1,586,175 + +0.6
1,586,175 + -0.5
1,586,175 + -0.2
1,586,175 + +0.1
1,586,176 - +0.3
1,586,176 - -0.0
1,586,176 - -0.2
1,586,226 + IAI46_07505 0.18 +1.0
1,586,264 + IAI46_07505 0.23 -0.8
1,586,264 + IAI46_07505 0.23 -0.6
1,586,264 + IAI46_07505 0.23 +0.1
1,586,265 - IAI46_07505 0.24 -0.7
1,586,265 - IAI46_07505 0.24 -0.4
1,586,265 - IAI46_07505 0.24 +0.1
1,586,611 - IAI46_07505 0.78 +1.3
1,586,611 - IAI46_07505 0.78 +0.2
1,586,727 + -0.6
1,586,727 + -0.2
1,586,728 - -0.9
1,586,730 + +0.1
1,586,753 - -1.0
1,586,753 - -0.3
1,586,753 - +1.7
1,586,770 + -0.2
1,586,784 - -0.1
1,586,827 - +0.1
1,586,831 + -0.9
1,586,831 + -0.5
1,586,831 + -0.2
1,586,850 - +0.3
1,586,855 + +0.1

Or see this region's nucleotide sequence