Strain Fitness in Serratia liquefaciens MT49 around IAI46_06985

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06975 and IAI46_06980 overlap by 4 nucleotidesIAI46_06980 and IAI46_06985 are separated by 277 nucleotidesIAI46_06985 and IAI46_06990 are separated by 58 nucleotidesIAI46_06990 and IAI46_06995 are separated by 52 nucleotides IAI46_06975: IAI46_06975 - hypothetical protein, at 1,478,661 to 1,478,957 _06975 IAI46_06980: IAI46_06980 - AAA family ATPase, at 1,478,954 to 1,479,589 _06980 IAI46_06985: IAI46_06985 - HNH nuclease family protein, at 1,479,867 to 1,480,208 _06985 IAI46_06990: IAI46_06990 - GNAT family N-acetyltransferase, at 1,480,267 to 1,480,728 _06990 IAI46_06995: IAI46_06995 - LysR family transcriptional regulator, at 1,480,781 to 1,481,674 _06995 Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -2 -1 0 1 2at 1478.913 kb on - strand, within IAI46_06975at 1479.052 kb on - strand, within IAI46_06980at 1479.107 kb on + strand, within IAI46_06980at 1479.136 kb on + strand, within IAI46_06980at 1479.137 kb on - strand, within IAI46_06980at 1479.174 kb on + strand, within IAI46_06980at 1479.175 kb on - strand, within IAI46_06980at 1479.175 kb on - strand, within IAI46_06980at 1479.175 kb on - strand, within IAI46_06980at 1479.194 kb on - strand, within IAI46_06980at 1479.194 kb on - strand, within IAI46_06980at 1479.195 kb on + strand, within IAI46_06980at 1479.196 kb on - strand, within IAI46_06980at 1479.345 kb on + strand, within IAI46_06980at 1479.352 kb on - strand, within IAI46_06980at 1479.413 kb on - strand, within IAI46_06980at 1479.413 kb on - strand, within IAI46_06980at 1479.446 kb on - strand, within IAI46_06980at 1479.446 kb on - strand, within IAI46_06980at 1479.446 kb on - strand, within IAI46_06980at 1479.448 kb on - strand, within IAI46_06980at 1479.520 kb on - strand, within IAI46_06980at 1479.664 kb on + strandat 1479.669 kb on - strandat 1479.687 kb on + strandat 1479.688 kb on - strandat 1479.688 kb on - strandat 1479.688 kb on - strandat 1479.728 kb on - strandat 1479.734 kb on - strandat 1479.734 kb on - strandat 1479.741 kb on - strandat 1479.771 kb on + strandat 1479.771 kb on + strandat 1479.772 kb on - strandat 1479.826 kb on + strandat 1479.868 kb on + strandat 1479.964 kb on + strand, within IAI46_06985at 1479.965 kb on - strand, within IAI46_06985at 1480.009 kb on + strand, within IAI46_06985at 1480.009 kb on + strand, within IAI46_06985at 1480.071 kb on - strand, within IAI46_06985at 1480.102 kb on + strand, within IAI46_06985at 1480.103 kb on - strand, within IAI46_06985at 1480.199 kb on + strandat 1480.199 kb on + strandat 1480.200 kb on - strandat 1480.200 kb on - strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.201 kb on + strandat 1480.202 kb on - strandat 1480.202 kb on - strandat 1480.202 kb on - strandat 1480.202 kb on - strandat 1480.202 kb on - strandat 1480.213 kb on + strandat 1480.213 kb on + strandat 1480.214 kb on - strandat 1480.214 kb on - strandat 1480.214 kb on - strandat 1480.229 kb on + strandat 1480.232 kb on + strandat 1480.235 kb on + strandat 1480.235 kb on + strandat 1480.235 kb on + strandat 1480.235 kb on + strandat 1480.236 kb on - strandat 1480.371 kb on - strand, within IAI46_06990at 1480.371 kb on - strand, within IAI46_06990at 1480.376 kb on + strand, within IAI46_06990at 1480.503 kb on + strand, within IAI46_06990at 1480.504 kb on - strand, within IAI46_06990at 1480.672 kb on + strand, within IAI46_06990at 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.763 kb on + strandat 1480.764 kb on - strandat 1480.764 kb on - strandat 1480.764 kb on - strandat 1480.764 kb on - strandat 1480.764 kb on - strandat 1480.764 kb on - strandat 1480.851 kb on + strandat 1480.852 kb on - strandat 1480.860 kb on + strandat 1480.860 kb on + strandat 1480.860 kb on + strandat 1480.861 kb on - strandat 1480.861 kb on - strandat 1480.861 kb on - strandat 1480.861 kb on - strandat 1480.861 kb on - strandat 1481.071 kb on + strand, within IAI46_06995at 1481.095 kb on - strand, within IAI46_06995at 1481.160 kb on + strand, within IAI46_06995

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,478,913 - IAI46_06975 0.85 +1.0
1,479,052 - IAI46_06980 0.15 +0.4
1,479,107 + IAI46_06980 0.24 -0.6
1,479,136 + IAI46_06980 0.29 +0.4
1,479,137 - IAI46_06980 0.29 -0.0
1,479,174 + IAI46_06980 0.35 +0.2
1,479,175 - IAI46_06980 0.35 -1.8
1,479,175 - IAI46_06980 0.35 -0.6
1,479,175 - IAI46_06980 0.35 -0.2
1,479,194 - IAI46_06980 0.38 +0.4
1,479,194 - IAI46_06980 0.38 +1.0
1,479,195 + IAI46_06980 0.38 +0.0
1,479,196 - IAI46_06980 0.38 +0.2
1,479,345 + IAI46_06980 0.61 +1.5
1,479,352 - IAI46_06980 0.63 +0.4
1,479,413 - IAI46_06980 0.72 +1.0
1,479,413 - IAI46_06980 0.72 +0.9
1,479,446 - IAI46_06980 0.77 -0.6
1,479,446 - IAI46_06980 0.77 +0.4
1,479,446 - IAI46_06980 0.77 +0.2
1,479,448 - IAI46_06980 0.78 +1.1
1,479,520 - IAI46_06980 0.89 +0.6
1,479,664 + -0.9
1,479,669 - +0.4
1,479,687 + +0.7
1,479,688 - -1.2
1,479,688 - +1.2
1,479,688 - +0.9
1,479,728 - +0.4
1,479,734 - +0.2
1,479,734 - +0.5
1,479,741 - +0.1
1,479,771 + -0.6
1,479,771 + -1.1
1,479,772 - -0.7
1,479,826 + -0.8
1,479,868 + +0.3
1,479,964 + IAI46_06985 0.28 +0.9
1,479,965 - IAI46_06985 0.29 +1.3
1,480,009 + IAI46_06985 0.42 +0.2
1,480,009 + IAI46_06985 0.42 +0.4
1,480,071 - IAI46_06985 0.60 +0.2
1,480,102 + IAI46_06985 0.69 +0.8
1,480,103 - IAI46_06985 0.69 -0.1
1,480,199 + +0.2
1,480,199 + +0.1
1,480,200 - -0.1
1,480,200 - +0.7
1,480,201 + -2.5
1,480,201 + +0.9
1,480,201 + -0.8
1,480,201 + +0.0
1,480,201 + -0.2
1,480,201 + -0.2
1,480,201 + +0.0
1,480,201 + +0.6
1,480,202 - +0.7
1,480,202 - -0.9
1,480,202 - -0.0
1,480,202 - +0.5
1,480,202 - +1.0
1,480,213 + -0.4
1,480,213 + -0.7
1,480,214 - +0.4
1,480,214 - -0.9
1,480,214 - +1.8
1,480,229 + -0.2
1,480,232 + +0.7
1,480,235 + -0.5
1,480,235 + +0.4
1,480,235 + -0.5
1,480,235 + +1.0
1,480,236 - -1.8
1,480,371 - IAI46_06990 0.23 +0.2
1,480,371 - IAI46_06990 0.23 -1.1
1,480,376 + IAI46_06990 0.24 -0.4
1,480,503 + IAI46_06990 0.51 -0.1
1,480,504 - IAI46_06990 0.51 +1.5
1,480,672 + IAI46_06990 0.88 +0.5
1,480,763 + +0.2
1,480,763 + +0.5
1,480,763 + -0.1
1,480,763 + +0.9
1,480,763 + -0.5
1,480,763 + -2.5
1,480,763 + +0.6
1,480,763 + +0.5
1,480,764 - +0.1
1,480,764 - +0.0
1,480,764 - -0.2
1,480,764 - -0.1
1,480,764 - +1.1
1,480,764 - -0.4
1,480,851 + +1.5
1,480,852 - +0.0
1,480,860 + +1.5
1,480,860 + -0.4
1,480,860 + +0.1
1,480,861 - -0.5
1,480,861 - +0.6
1,480,861 - +0.8
1,480,861 - +0.3
1,480,861 - +0.0
1,481,071 + IAI46_06995 0.32 -0.1
1,481,095 - IAI46_06995 0.35 +1.0
1,481,160 + IAI46_06995 0.42 +0.3

Or see this region's nucleotide sequence