Strain Fitness in Serratia liquefaciens MT49 around IAI46_06965

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06955 and IAI46_06960 overlap by 4 nucleotidesIAI46_06960 and IAI46_06965 overlap by 8 nucleotidesIAI46_06965 and IAI46_06970 overlap by 8 nucleotidesIAI46_06970 and IAI46_06975 are separated by 31 nucleotides IAI46_06955: IAI46_06955 - ABC transporter substrate-binding protein, at 1,475,098 to 1,476,138 _06955 IAI46_06960: IAI46_06960 - iron ABC transporter permease, at 1,476,135 to 1,477,133 _06960 IAI46_06965: IAI46_06965 - ABC transporter ATP-binding protein, at 1,477,126 to 1,477,905 _06965 IAI46_06970: IAI46_06970 - substrate-binding domain-containing protein, at 1,477,898 to 1,478,629 _06970 IAI46_06975: IAI46_06975 - hypothetical protein, at 1,478,661 to 1,478,957 _06975 Position (kb) 1477 1478Strain fitness (log2 ratio) -1 0 1 2at 1476.266 kb on + strand, within IAI46_06960at 1476.319 kb on + strand, within IAI46_06960at 1476.455 kb on - strand, within IAI46_06960at 1476.497 kb on - strand, within IAI46_06960at 1476.533 kb on + strand, within IAI46_06960at 1476.557 kb on + strand, within IAI46_06960at 1476.627 kb on + strand, within IAI46_06960at 1476.628 kb on - strand, within IAI46_06960at 1476.628 kb on - strand, within IAI46_06960at 1476.704 kb on + strand, within IAI46_06960at 1476.751 kb on + strand, within IAI46_06960at 1476.752 kb on - strand, within IAI46_06960at 1476.996 kb on + strand, within IAI46_06960at 1476.996 kb on + strand, within IAI46_06960at 1476.996 kb on + strand, within IAI46_06960at 1476.996 kb on + strand, within IAI46_06960at 1476.996 kb on + strand, within IAI46_06960at 1476.996 kb on + strand, within IAI46_06960at 1476.997 kb on - strand, within IAI46_06960at 1476.997 kb on - strand, within IAI46_06960at 1476.997 kb on - strand, within IAI46_06960at 1476.997 kb on - strand, within IAI46_06960at 1476.999 kb on - strand, within IAI46_06960at 1477.140 kb on - strandat 1477.264 kb on - strand, within IAI46_06965at 1477.408 kb on + strand, within IAI46_06965at 1477.480 kb on - strand, within IAI46_06965at 1477.871 kb on + strandat 1477.989 kb on + strand, within IAI46_06970at 1477.990 kb on - strand, within IAI46_06970at 1477.998 kb on + strand, within IAI46_06970at 1477.998 kb on + strand, within IAI46_06970at 1478.155 kb on - strand, within IAI46_06970at 1478.155 kb on - strand, within IAI46_06970at 1478.155 kb on - strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.158 kb on + strand, within IAI46_06970at 1478.159 kb on - strand, within IAI46_06970at 1478.159 kb on - strand, within IAI46_06970at 1478.162 kb on - strand, within IAI46_06970at 1478.162 kb on - strand, within IAI46_06970at 1478.196 kb on + strand, within IAI46_06970at 1478.197 kb on - strand, within IAI46_06970at 1478.259 kb on - strand, within IAI46_06970at 1478.390 kb on + strand, within IAI46_06970at 1478.390 kb on + strand, within IAI46_06970at 1478.391 kb on - strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.438 kb on + strand, within IAI46_06970at 1478.439 kb on - strand, within IAI46_06970at 1478.439 kb on - strand, within IAI46_06970at 1478.484 kb on + strand, within IAI46_06970at 1478.513 kb on + strand, within IAI46_06970at 1478.514 kb on - strand, within IAI46_06970at 1478.529 kb on + strand, within IAI46_06970at 1478.529 kb on + strand, within IAI46_06970at 1478.530 kb on - strand, within IAI46_06970at 1478.608 kb on - strandat 1478.627 kb on + strandat 1478.627 kb on + strandat 1478.635 kb on + strandat 1478.636 kb on - strandat 1478.636 kb on - strandat 1478.638 kb on + strandat 1478.638 kb on + strandat 1478.638 kb on + strandat 1478.638 kb on + strandat 1478.639 kb on - strandat 1478.652 kb on - strandat 1478.659 kb on + strandat 1478.660 kb on - strandat 1478.660 kb on - strandat 1478.663 kb on - strandat 1478.839 kb on + strand, within IAI46_06975at 1478.840 kb on - strand, within IAI46_06975at 1478.840 kb on - strand, within IAI46_06975

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,476,266 + IAI46_06960 0.13 -0.9
1,476,319 + IAI46_06960 0.18 -0.2
1,476,455 - IAI46_06960 0.32 -0.6
1,476,497 - IAI46_06960 0.36 +0.1
1,476,533 + IAI46_06960 0.40 +0.1
1,476,557 + IAI46_06960 0.42 +1.0
1,476,627 + IAI46_06960 0.49 -0.4
1,476,628 - IAI46_06960 0.49 +0.3
1,476,628 - IAI46_06960 0.49 -0.1
1,476,704 + IAI46_06960 0.57 +0.1
1,476,751 + IAI46_06960 0.62 +1.1
1,476,752 - IAI46_06960 0.62 +0.5
1,476,996 + IAI46_06960 0.86 +0.2
1,476,996 + IAI46_06960 0.86 -0.3
1,476,996 + IAI46_06960 0.86 +0.2
1,476,996 + IAI46_06960 0.86 -0.0
1,476,996 + IAI46_06960 0.86 +0.8
1,476,996 + IAI46_06960 0.86 +0.5
1,476,997 - IAI46_06960 0.86 +0.5
1,476,997 - IAI46_06960 0.86 +0.9
1,476,997 - IAI46_06960 0.86 +0.5
1,476,997 - IAI46_06960 0.86 +0.3
1,476,999 - IAI46_06960 0.86 +0.1
1,477,140 - +0.2
1,477,264 - IAI46_06965 0.18 -0.1
1,477,408 + IAI46_06965 0.36 -1.0
1,477,480 - IAI46_06965 0.45 -0.4
1,477,871 + -0.7
1,477,989 + IAI46_06970 0.12 -0.6
1,477,990 - IAI46_06970 0.13 -0.6
1,477,998 + IAI46_06970 0.14 -0.0
1,477,998 + IAI46_06970 0.14 +1.6
1,478,155 - IAI46_06970 0.35 +1.2
1,478,155 - IAI46_06970 0.35 +0.1
1,478,155 - IAI46_06970 0.35 +0.6
1,478,158 + IAI46_06970 0.36 +0.8
1,478,158 + IAI46_06970 0.36 +0.6
1,478,158 + IAI46_06970 0.36 -0.4
1,478,158 + IAI46_06970 0.36 +0.6
1,478,158 + IAI46_06970 0.36 -1.7
1,478,158 + IAI46_06970 0.36 -1.1
1,478,159 - IAI46_06970 0.36 +0.5
1,478,159 - IAI46_06970 0.36 -0.8
1,478,162 - IAI46_06970 0.36 +0.2
1,478,162 - IAI46_06970 0.36 +0.2
1,478,196 + IAI46_06970 0.41 +1.1
1,478,197 - IAI46_06970 0.41 +0.7
1,478,259 - IAI46_06970 0.49 +0.7
1,478,390 + IAI46_06970 0.67 +0.3
1,478,390 + IAI46_06970 0.67 -0.2
1,478,391 - IAI46_06970 0.67 -0.2
1,478,438 + IAI46_06970 0.74 -0.1
1,478,438 + IAI46_06970 0.74 +0.4
1,478,438 + IAI46_06970 0.74 +0.6
1,478,438 + IAI46_06970 0.74 +0.5
1,478,439 - IAI46_06970 0.74 +0.2
1,478,439 - IAI46_06970 0.74 +0.2
1,478,484 + IAI46_06970 0.80 -0.1
1,478,513 + IAI46_06970 0.84 -0.3
1,478,514 - IAI46_06970 0.84 +1.9
1,478,529 + IAI46_06970 0.86 -0.4
1,478,529 + IAI46_06970 0.86 +0.2
1,478,530 - IAI46_06970 0.86 +0.1
1,478,608 - +0.7
1,478,627 + -0.4
1,478,627 + +0.6
1,478,635 + +0.3
1,478,636 - -0.4
1,478,636 - +0.5
1,478,638 + +0.3
1,478,638 + +0.5
1,478,638 + +0.2
1,478,638 + +0.0
1,478,639 - +0.5
1,478,652 - +0.6
1,478,659 + -1.6
1,478,660 - +0.5
1,478,660 - -0.1
1,478,663 - +0.6
1,478,839 + IAI46_06975 0.60 +1.2
1,478,840 - IAI46_06975 0.60 +0.6
1,478,840 - IAI46_06975 0.60 -0.7

Or see this region's nucleotide sequence