Strain Fitness in Serratia liquefaciens MT49 around IAI46_06405

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06395 and IAI46_06400 overlap by 4 nucleotidesIAI46_06400 and IAI46_06405 are separated by 206 nucleotidesIAI46_06405 and IAI46_06410 are separated by 70 nucleotides IAI46_06395: IAI46_06395 - transporter substrate-binding domain-containing protein, at 1,362,475 to 1,365,690 _06395 IAI46_06400: IAI46_06400 - response regulator transcription factor, at 1,365,687 to 1,366,292 _06400 IAI46_06405: IAI46_06405 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 1,366,499 to 1,367,551 _06405 IAI46_06410: IAI46_06410 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 1,367,622 to 1,368,374 _06410 Position (kb) 1366 1367 1368Strain fitness (log2 ratio) -2 -1 0 1 2at 1365.588 kb on + strandat 1365.589 kb on - strandat 1365.611 kb on + strandat 1365.611 kb on + strandat 1365.612 kb on - strandat 1365.612 kb on - strandat 1365.642 kb on + strandat 1365.642 kb on + strandat 1365.643 kb on - strandat 1365.650 kb on + strandat 1365.650 kb on + strandat 1365.651 kb on - strandat 1365.940 kb on - strand, within IAI46_06400at 1366.013 kb on - strand, within IAI46_06400at 1366.019 kb on + strand, within IAI46_06400at 1366.019 kb on + strand, within IAI46_06400at 1366.027 kb on + strand, within IAI46_06400at 1366.027 kb on + strand, within IAI46_06400at 1366.028 kb on - strand, within IAI46_06400at 1366.028 kb on - strand, within IAI46_06400at 1366.028 kb on - strand, within IAI46_06400at 1366.028 kb on - strand, within IAI46_06400at 1366.032 kb on - strand, within IAI46_06400at 1366.032 kb on - strand, within IAI46_06400at 1366.032 kb on - strand, within IAI46_06400at 1366.051 kb on + strand, within IAI46_06400at 1366.051 kb on + strand, within IAI46_06400at 1366.051 kb on + strand, within IAI46_06400at 1366.052 kb on - strand, within IAI46_06400at 1366.052 kb on - strand, within IAI46_06400at 1366.052 kb on - strand, within IAI46_06400at 1366.276 kb on - strandat 1366.276 kb on - strandat 1366.329 kb on + strandat 1366.498 kb on + strandat 1366.712 kb on + strand, within IAI46_06405at 1366.840 kb on + strand, within IAI46_06405at 1366.879 kb on + strand, within IAI46_06405at 1366.952 kb on + strand, within IAI46_06405at 1366.993 kb on + strand, within IAI46_06405at 1366.993 kb on + strand, within IAI46_06405at 1367.086 kb on + strand, within IAI46_06405at 1367.086 kb on + strand, within IAI46_06405at 1367.087 kb on - strand, within IAI46_06405at 1367.087 kb on - strand, within IAI46_06405at 1367.192 kb on - strand, within IAI46_06405at 1367.553 kb on - strandat 1368.455 kb on - strandat 1368.467 kb on + strandat 1368.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,365,588 + +0.3
1,365,589 - -0.4
1,365,611 + +1.5
1,365,611 + -0.1
1,365,612 - +0.0
1,365,612 - -0.5
1,365,642 + -1.9
1,365,642 + +0.2
1,365,643 - +0.2
1,365,650 + -0.2
1,365,650 + +0.4
1,365,651 - +0.0
1,365,940 - IAI46_06400 0.42 -0.5
1,366,013 - IAI46_06400 0.54 +0.8
1,366,019 + IAI46_06400 0.55 -0.0
1,366,019 + IAI46_06400 0.55 +0.5
1,366,027 + IAI46_06400 0.56 +0.7
1,366,027 + IAI46_06400 0.56 +0.4
1,366,028 - IAI46_06400 0.56 -0.2
1,366,028 - IAI46_06400 0.56 +0.9
1,366,028 - IAI46_06400 0.56 +0.3
1,366,028 - IAI46_06400 0.56 -1.8
1,366,032 - IAI46_06400 0.57 +0.7
1,366,032 - IAI46_06400 0.57 +0.3
1,366,032 - IAI46_06400 0.57 +1.0
1,366,051 + IAI46_06400 0.60 -0.1
1,366,051 + IAI46_06400 0.60 +0.5
1,366,051 + IAI46_06400 0.60 -0.0
1,366,052 - IAI46_06400 0.60 -0.2
1,366,052 - IAI46_06400 0.60 -0.8
1,366,052 - IAI46_06400 0.60 -0.0
1,366,276 - -0.2
1,366,276 - +0.5
1,366,329 + +0.7
1,366,498 + +0.8
1,366,712 + IAI46_06405 0.20 -0.2
1,366,840 + IAI46_06405 0.32 -0.8
1,366,879 + IAI46_06405 0.36 +0.7
1,366,952 + IAI46_06405 0.43 -0.4
1,366,993 + IAI46_06405 0.47 -0.2
1,366,993 + IAI46_06405 0.47 -0.3
1,367,086 + IAI46_06405 0.56 -0.2
1,367,086 + IAI46_06405 0.56 -0.1
1,367,087 - IAI46_06405 0.56 +0.5
1,367,087 - IAI46_06405 0.56 -0.0
1,367,192 - IAI46_06405 0.66 +0.8
1,367,553 - +2.2
1,368,455 - +0.7
1,368,467 + -1.3
1,368,490 - +0.6

Or see this region's nucleotide sequence