Strain Fitness in Serratia liquefaciens MT49 around IAI46_05705

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05700 and IAI46_05705 are separated by 742 nucleotidesIAI46_05705 and IAI46_05710 are separated by 249 nucleotides IAI46_05700: IAI46_05700 - DUF4942 domain-containing protein, at 1,228,224 to 1,229,057 _05700 IAI46_05705: IAI46_05705 - hypothetical protein, at 1,229,800 to 1,229,958 _05705 IAI46_05710: IAI46_05710 - hypothetical protein, at 1,230,208 to 1,230,387 _05710 Position (kb) 1229 1230Strain fitness (log2 ratio) -2 -1 0 1 2at 1228.904 kb on - strand, within IAI46_05700at 1228.919 kb on + strand, within IAI46_05700at 1228.924 kb on - strand, within IAI46_05700at 1228.936 kb on - strand, within IAI46_05700at 1228.940 kb on + strand, within IAI46_05700at 1228.940 kb on + strand, within IAI46_05700at 1228.951 kb on - strand, within IAI46_05700at 1228.973 kb on + strand, within IAI46_05700at 1228.974 kb on - strandat 1229.003 kb on + strandat 1229.003 kb on + strandat 1229.003 kb on + strandat 1229.066 kb on - strandat 1229.128 kb on - strandat 1229.136 kb on - strandat 1229.145 kb on + strandat 1229.145 kb on + strandat 1229.248 kb on + strandat 1229.249 kb on - strandat 1229.291 kb on - strandat 1229.374 kb on + strandat 1229.375 kb on - strandat 1229.389 kb on + strandat 1229.390 kb on - strandat 1229.393 kb on + strandat 1229.393 kb on + strandat 1229.393 kb on + strandat 1229.393 kb on + strandat 1229.394 kb on - strandat 1229.394 kb on - strandat 1229.406 kb on + strandat 1229.454 kb on + strandat 1229.455 kb on - strandat 1229.461 kb on - strandat 1229.503 kb on + strandat 1229.504 kb on - strandat 1229.533 kb on + strandat 1229.533 kb on + strandat 1229.553 kb on + strandat 1229.554 kb on - strandat 1229.584 kb on + strandat 1229.584 kb on + strandat 1229.585 kb on - strandat 1229.595 kb on + strandat 1229.606 kb on + strandat 1229.607 kb on - strandat 1229.631 kb on + strandat 1229.631 kb on + strandat 1229.665 kb on - strandat 1229.665 kb on - strandat 1229.703 kb on + strandat 1229.703 kb on + strandat 1229.704 kb on - strandat 1229.720 kb on - strandat 1229.736 kb on - strandat 1229.768 kb on + strandat 1229.769 kb on - strandat 1229.774 kb on - strandat 1229.777 kb on - strandat 1229.777 kb on - strandat 1229.780 kb on + strandat 1229.780 kb on + strandat 1229.787 kb on - strandat 1229.805 kb on + strandat 1229.809 kb on - strandat 1229.905 kb on - strand, within IAI46_05705at 1229.957 kb on - strandat 1229.957 kb on - strandat 1230.054 kb on + strandat 1230.057 kb on - strandat 1230.057 kb on - strandat 1230.057 kb on - strandat 1230.119 kb on + strandat 1230.119 kb on + strandat 1230.120 kb on - strandat 1230.201 kb on + strandat 1230.202 kb on - strandat 1230.202 kb on - strandat 1230.319 kb on + strand, within IAI46_05710at 1230.401 kb on - strandat 1230.443 kb on + strandat 1230.502 kb on + strandat 1230.503 kb on - strandat 1230.503 kb on - strandat 1230.600 kb on + strandat 1230.611 kb on - strandat 1230.654 kb on + strandat 1230.702 kb on + strandat 1230.715 kb on + strandat 1230.745 kb on + strandat 1230.745 kb on + strandat 1230.751 kb on - strandat 1230.756 kb on + strandat 1230.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,228,904 - IAI46_05700 0.82 +0.3
1,228,919 + IAI46_05700 0.83 +0.3
1,228,924 - IAI46_05700 0.84 +0.6
1,228,936 - IAI46_05700 0.85 -0.6
1,228,940 + IAI46_05700 0.86 -0.2
1,228,940 + IAI46_05700 0.86 +0.4
1,228,951 - IAI46_05700 0.87 +0.3
1,228,973 + IAI46_05700 0.90 +0.4
1,228,974 - +0.1
1,229,003 + -0.0
1,229,003 + +0.3
1,229,003 + +1.3
1,229,066 - +0.1
1,229,128 - -1.8
1,229,136 - +0.2
1,229,145 + -0.5
1,229,145 + -1.2
1,229,248 + +0.6
1,229,249 - -0.7
1,229,291 - +0.7
1,229,374 + +0.8
1,229,375 - +0.1
1,229,389 + -0.5
1,229,390 - -0.1
1,229,393 + +0.8
1,229,393 + -1.8
1,229,393 + -0.1
1,229,393 + +0.1
1,229,394 - -0.5
1,229,394 - -0.4
1,229,406 + -0.5
1,229,454 + -1.1
1,229,455 - +0.4
1,229,461 - +1.1
1,229,503 + +1.4
1,229,504 - +2.0
1,229,533 + +0.7
1,229,533 + +0.5
1,229,553 + +0.3
1,229,554 - +0.3
1,229,584 + +0.4
1,229,584 + +1.6
1,229,585 - -0.1
1,229,595 + -0.1
1,229,606 + -0.5
1,229,607 - -0.6
1,229,631 + +0.4
1,229,631 + -0.5
1,229,665 - +0.8
1,229,665 - +0.8
1,229,703 + +0.8
1,229,703 + -1.2
1,229,704 - +0.7
1,229,720 - -0.4
1,229,736 - +0.6
1,229,768 + +0.2
1,229,769 - -2.1
1,229,774 - -0.7
1,229,777 - -0.7
1,229,777 - +0.1
1,229,780 + +0.4
1,229,780 + -0.1
1,229,787 - -0.2
1,229,805 + -0.5
1,229,809 - +0.1
1,229,905 - IAI46_05705 0.66 +0.4
1,229,957 - +0.0
1,229,957 - +0.1
1,230,054 + +0.2
1,230,057 - -0.5
1,230,057 - +0.0
1,230,057 - -1.0
1,230,119 + -0.7
1,230,119 + +0.6
1,230,120 - +0.3
1,230,201 + +1.0
1,230,202 - +0.7
1,230,202 - +0.2
1,230,319 + IAI46_05710 0.62 +1.2
1,230,401 - +0.3
1,230,443 + +0.2
1,230,502 + -1.0
1,230,503 - +0.3
1,230,503 - -0.1
1,230,600 + -0.9
1,230,611 - +0.9
1,230,654 + -1.2
1,230,702 + +0.1
1,230,715 + -0.1
1,230,745 + -0.4
1,230,745 + -0.2
1,230,751 - +0.4
1,230,756 + +0.5
1,230,866 - +0.1

Or see this region's nucleotide sequence