Strain Fitness in Serratia liquefaciens MT49 around IAI46_04985

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04980 and IAI46_04985 are separated by 4 nucleotidesIAI46_04985 and IAI46_04990 are separated by 439 nucleotides IAI46_04980: IAI46_04980 - cytochrome o ubiquinol oxidase subunit I, at 1,071,321 to 1,073,312 _04980 IAI46_04985: IAI46_04985 - cytochrome o ubiquinol oxidase subunit II, at 1,073,317 to 1,074,264 _04985 IAI46_04990: IAI46_04990 - muropeptide MFS transporter AmpG, at 1,074,704 to 1,076,182 _04990 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -1 0 1 2at 1072.324 kb on - strand, within IAI46_04980at 1072.324 kb on - strand, within IAI46_04980at 1072.324 kb on - strand, within IAI46_04980at 1072.324 kb on - strand, within IAI46_04980at 1072.343 kb on + strand, within IAI46_04980at 1072.373 kb on + strand, within IAI46_04980at 1072.374 kb on - strand, within IAI46_04980at 1072.448 kb on + strand, within IAI46_04980at 1072.449 kb on - strand, within IAI46_04980at 1072.449 kb on - strand, within IAI46_04980at 1072.449 kb on - strand, within IAI46_04980at 1072.449 kb on - strand, within IAI46_04980at 1072.450 kb on + strand, within IAI46_04980at 1072.450 kb on + strand, within IAI46_04980at 1072.450 kb on + strand, within IAI46_04980at 1072.450 kb on + strand, within IAI46_04980at 1072.450 kb on + strand, within IAI46_04980at 1072.451 kb on - strand, within IAI46_04980at 1072.451 kb on - strand, within IAI46_04980at 1072.451 kb on - strand, within IAI46_04980at 1072.489 kb on + strand, within IAI46_04980at 1072.489 kb on + strand, within IAI46_04980at 1072.489 kb on + strand, within IAI46_04980at 1072.489 kb on + strand, within IAI46_04980at 1072.521 kb on - strand, within IAI46_04980at 1072.607 kb on + strand, within IAI46_04980at 1072.608 kb on - strand, within IAI46_04980at 1072.611 kb on - strand, within IAI46_04980at 1072.748 kb on - strand, within IAI46_04980at 1072.771 kb on + strand, within IAI46_04980at 1072.771 kb on + strand, within IAI46_04980at 1072.772 kb on - strand, within IAI46_04980at 1072.855 kb on - strand, within IAI46_04980at 1072.855 kb on - strand, within IAI46_04980at 1072.932 kb on + strand, within IAI46_04980at 1072.933 kb on - strand, within IAI46_04980at 1072.933 kb on - strand, within IAI46_04980at 1072.933 kb on - strand, within IAI46_04980at 1072.938 kb on + strand, within IAI46_04980at 1072.938 kb on + strand, within IAI46_04980at 1072.939 kb on - strand, within IAI46_04980at 1072.939 kb on - strand, within IAI46_04980at 1072.939 kb on - strand, within IAI46_04980at 1073.018 kb on - strand, within IAI46_04980at 1073.073 kb on - strand, within IAI46_04980at 1073.073 kb on - strand, within IAI46_04980at 1073.132 kb on - strandat 1073.132 kb on - strandat 1073.150 kb on + strandat 1073.203 kb on + strandat 1073.204 kb on - strandat 1073.377 kb on - strandat 1073.377 kb on - strandat 1073.412 kb on + strand, within IAI46_04985at 1073.413 kb on - strand, within IAI46_04985at 1073.433 kb on + strand, within IAI46_04985at 1073.471 kb on + strand, within IAI46_04985at 1073.472 kb on - strand, within IAI46_04985at 1073.511 kb on + strand, within IAI46_04985at 1073.658 kb on - strand, within IAI46_04985at 1073.728 kb on + strand, within IAI46_04985at 1073.729 kb on - strand, within IAI46_04985at 1073.844 kb on + strand, within IAI46_04985at 1073.844 kb on + strand, within IAI46_04985at 1073.845 kb on - strand, within IAI46_04985at 1073.934 kb on + strand, within IAI46_04985at 1073.935 kb on - strand, within IAI46_04985at 1073.946 kb on + strand, within IAI46_04985at 1073.946 kb on + strand, within IAI46_04985at 1073.977 kb on - strand, within IAI46_04985at 1074.032 kb on + strand, within IAI46_04985at 1074.032 kb on + strand, within IAI46_04985at 1074.060 kb on - strand, within IAI46_04985at 1074.090 kb on + strand, within IAI46_04985at 1074.132 kb on + strand, within IAI46_04985at 1074.133 kb on - strand, within IAI46_04985at 1074.133 kb on - strand, within IAI46_04985at 1074.182 kb on - strandat 1074.186 kb on + strandat 1074.187 kb on - strandat 1074.187 kb on - strandat 1074.187 kb on - strandat 1074.187 kb on - strandat 1074.205 kb on + strandat 1074.205 kb on + strandat 1074.206 kb on - strandat 1074.220 kb on + strandat 1074.243 kb on + strandat 1074.249 kb on - strandat 1074.266 kb on + strandat 1074.266 kb on + strandat 1074.267 kb on - strandat 1074.279 kb on + strandat 1074.279 kb on + strandat 1074.280 kb on - strandat 1074.280 kb on - strandat 1074.280 kb on - strandat 1074.290 kb on + strandat 1074.291 kb on - strandat 1074.339 kb on + strandat 1074.339 kb on + strandat 1074.340 kb on - strandat 1074.340 kb on - strandat 1074.349 kb on + strandat 1074.384 kb on + strandat 1074.420 kb on - strandat 1074.465 kb on + strandat 1074.469 kb on - strandat 1074.469 kb on - strandat 1074.645 kb on - strandat 1074.648 kb on + strandat 1074.649 kb on - strandat 1074.653 kb on - strandat 1074.653 kb on - strandat 1074.735 kb on + strandat 1074.735 kb on + strandat 1074.760 kb on + strandat 1074.764 kb on + strandat 1074.764 kb on + strandat 1074.764 kb on + strandat 1074.765 kb on - strandat 1074.765 kb on - strandat 1074.765 kb on - strandat 1074.845 kb on - strandat 1074.845 kb on - strandat 1074.909 kb on + strand, within IAI46_04990at 1074.958 kb on + strand, within IAI46_04990at 1074.958 kb on + strand, within IAI46_04990at 1074.960 kb on + strand, within IAI46_04990at 1074.961 kb on - strand, within IAI46_04990at 1075.030 kb on - strand, within IAI46_04990at 1075.030 kb on - strand, within IAI46_04990at 1075.083 kb on + strand, within IAI46_04990at 1075.083 kb on + strand, within IAI46_04990at 1075.083 kb on + strand, within IAI46_04990at 1075.084 kb on - strand, within IAI46_04990at 1075.084 kb on - strand, within IAI46_04990at 1075.151 kb on + strand, within IAI46_04990at 1075.152 kb on - strand, within IAI46_04990

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,072,324 - IAI46_04980 0.50 -0.7
1,072,324 - IAI46_04980 0.50 +0.5
1,072,324 - IAI46_04980 0.50 +1.2
1,072,324 - IAI46_04980 0.50 +0.1
1,072,343 + IAI46_04980 0.51 +1.1
1,072,373 + IAI46_04980 0.53 +0.1
1,072,374 - IAI46_04980 0.53 -0.1
1,072,448 + IAI46_04980 0.57 +1.0
1,072,449 - IAI46_04980 0.57 +0.7
1,072,449 - IAI46_04980 0.57 +0.1
1,072,449 - IAI46_04980 0.57 +0.5
1,072,449 - IAI46_04980 0.57 +1.1
1,072,450 + IAI46_04980 0.57 +1.5
1,072,450 + IAI46_04980 0.57 +0.4
1,072,450 + IAI46_04980 0.57 +0.0
1,072,450 + IAI46_04980 0.57 +0.6
1,072,450 + IAI46_04980 0.57 +1.3
1,072,451 - IAI46_04980 0.57 -0.2
1,072,451 - IAI46_04980 0.57 +1.0
1,072,451 - IAI46_04980 0.57 -0.9
1,072,489 + IAI46_04980 0.59 +0.8
1,072,489 + IAI46_04980 0.59 +1.3
1,072,489 + IAI46_04980 0.59 +0.8
1,072,489 + IAI46_04980 0.59 +0.7
1,072,521 - IAI46_04980 0.60 -0.4
1,072,607 + IAI46_04980 0.65 +1.9
1,072,608 - IAI46_04980 0.65 +2.3
1,072,611 - IAI46_04980 0.65 +0.2
1,072,748 - IAI46_04980 0.72 +0.5
1,072,771 + IAI46_04980 0.73 -0.2
1,072,771 + IAI46_04980 0.73 +0.7
1,072,772 - IAI46_04980 0.73 -0.3
1,072,855 - IAI46_04980 0.77 +1.3
1,072,855 - IAI46_04980 0.77 +0.1
1,072,932 + IAI46_04980 0.81 +0.2
1,072,933 - IAI46_04980 0.81 +0.9
1,072,933 - IAI46_04980 0.81 -1.5
1,072,933 - IAI46_04980 0.81 -0.6
1,072,938 + IAI46_04980 0.81 -0.8
1,072,938 + IAI46_04980 0.81 +0.4
1,072,939 - IAI46_04980 0.81 -0.2
1,072,939 - IAI46_04980 0.81 -0.1
1,072,939 - IAI46_04980 0.81 +2.3
1,073,018 - IAI46_04980 0.85 +0.6
1,073,073 - IAI46_04980 0.88 +1.6
1,073,073 - IAI46_04980 0.88 -0.2
1,073,132 - +0.2
1,073,132 - +0.2
1,073,150 + -0.2
1,073,203 + +0.8
1,073,204 - -0.7
1,073,377 - +0.5
1,073,377 - +0.4
1,073,412 + IAI46_04985 0.10 +0.1
1,073,413 - IAI46_04985 0.10 -0.2
1,073,433 + IAI46_04985 0.12 +1.4
1,073,471 + IAI46_04985 0.16 +0.9
1,073,472 - IAI46_04985 0.16 +0.1
1,073,511 + IAI46_04985 0.20 +0.6
1,073,658 - IAI46_04985 0.36 -0.1
1,073,728 + IAI46_04985 0.43 +1.1
1,073,729 - IAI46_04985 0.43 +0.5
1,073,844 + IAI46_04985 0.56 +0.9
1,073,844 + IAI46_04985 0.56 -0.1
1,073,845 - IAI46_04985 0.56 -0.9
1,073,934 + IAI46_04985 0.65 +0.9
1,073,935 - IAI46_04985 0.65 +0.2
1,073,946 + IAI46_04985 0.66 +0.9
1,073,946 + IAI46_04985 0.66 +0.4
1,073,977 - IAI46_04985 0.70 +0.4
1,074,032 + IAI46_04985 0.75 -0.5
1,074,032 + IAI46_04985 0.75 -0.5
1,074,060 - IAI46_04985 0.78 +0.3
1,074,090 + IAI46_04985 0.82 +1.6
1,074,132 + IAI46_04985 0.86 +0.5
1,074,133 - IAI46_04985 0.86 +1.7
1,074,133 - IAI46_04985 0.86 +1.1
1,074,182 - +0.5
1,074,186 + +0.3
1,074,187 - -0.3
1,074,187 - +0.2
1,074,187 - +0.2
1,074,187 - +0.4
1,074,205 + +0.5
1,074,205 + +0.2
1,074,206 - +0.7
1,074,220 + +1.3
1,074,243 + +0.9
1,074,249 - +0.9
1,074,266 + +0.9
1,074,266 + +2.1
1,074,267 - -0.2
1,074,279 + +0.7
1,074,279 + -0.2
1,074,280 - +0.6
1,074,280 - +0.6
1,074,280 - +0.8
1,074,290 + -0.8
1,074,291 - +0.2
1,074,339 + +0.7
1,074,339 + -0.3
1,074,340 - +0.8
1,074,340 - +2.1
1,074,349 + -0.0
1,074,384 + -0.1
1,074,420 - -0.1
1,074,465 + -0.1
1,074,469 - +0.6
1,074,469 - -0.4
1,074,645 - -0.4
1,074,648 + +1.3
1,074,649 - +0.4
1,074,653 - -0.4
1,074,653 - +0.7
1,074,735 + -0.1
1,074,735 + +0.7
1,074,760 + +0.6
1,074,764 + -1.6
1,074,764 + +0.8
1,074,764 + -1.0
1,074,765 - +0.3
1,074,765 - +0.2
1,074,765 - +0.8
1,074,845 - +0.5
1,074,845 - -0.8
1,074,909 + IAI46_04990 0.14 -0.1
1,074,958 + IAI46_04990 0.17 -0.8
1,074,958 + IAI46_04990 0.17 +1.0
1,074,960 + IAI46_04990 0.17 -0.2
1,074,961 - IAI46_04990 0.17 +0.1
1,075,030 - IAI46_04990 0.22 +0.5
1,075,030 - IAI46_04990 0.22 -0.6
1,075,083 + IAI46_04990 0.26 +0.2
1,075,083 + IAI46_04990 0.26 -0.2
1,075,083 + IAI46_04990 0.26 +0.1
1,075,084 - IAI46_04990 0.26 -0.3
1,075,084 - IAI46_04990 0.26 +0.1
1,075,151 + IAI46_04990 0.30 +0.5
1,075,152 - IAI46_04990 0.30 -0.1

Or see this region's nucleotide sequence