Strain Fitness in Serratia liquefaciens MT49 around IAI46_04970

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04965 and IAI46_04970 are separated by 17 nucleotidesIAI46_04970 and IAI46_04975 overlap by 4 nucleotidesIAI46_04975 and IAI46_04980 overlap by 11 nucleotides IAI46_04965: IAI46_04965 - protoheme IX farnesyltransferase, at 1,069,471 to 1,070,361 _04965 IAI46_04970: IAI46_04970 - cytochrome o ubiquinol oxidase subunit IV, at 1,070,379 to 1,070,717 _04970 IAI46_04975: IAI46_04975 - cytochrome o ubiquinol oxidase subunit III, at 1,070,714 to 1,071,331 _04975 IAI46_04980: IAI46_04980 - cytochrome o ubiquinol oxidase subunit I, at 1,071,321 to 1,073,312 _04980 Position (kb) 1070 1071Strain fitness (log2 ratio) -2 -1 0 1 2at 1069.473 kb on - strandat 1069.481 kb on + strandat 1069.482 kb on - strandat 1069.482 kb on - strandat 1069.548 kb on + strandat 1069.549 kb on - strandat 1069.610 kb on + strand, within IAI46_04965at 1069.668 kb on - strand, within IAI46_04965at 1069.674 kb on - strand, within IAI46_04965at 1069.717 kb on - strand, within IAI46_04965at 1069.731 kb on - strand, within IAI46_04965at 1069.864 kb on - strand, within IAI46_04965at 1069.965 kb on - strand, within IAI46_04965at 1069.986 kb on - strand, within IAI46_04965at 1069.986 kb on - strand, within IAI46_04965at 1069.986 kb on - strand, within IAI46_04965at 1070.007 kb on - strand, within IAI46_04965at 1070.058 kb on + strand, within IAI46_04965at 1070.059 kb on - strand, within IAI46_04965at 1070.060 kb on + strand, within IAI46_04965at 1070.100 kb on - strand, within IAI46_04965at 1070.100 kb on - strand, within IAI46_04965at 1070.110 kb on + strand, within IAI46_04965at 1070.134 kb on + strand, within IAI46_04965at 1070.189 kb on + strand, within IAI46_04965at 1070.190 kb on - strand, within IAI46_04965at 1070.190 kb on - strand, within IAI46_04965at 1070.190 kb on - strand, within IAI46_04965at 1070.190 kb on - strand, within IAI46_04965at 1070.190 kb on - strand, within IAI46_04965at 1070.334 kb on + strandat 1070.339 kb on - strandat 1070.339 kb on - strandat 1070.355 kb on + strandat 1070.355 kb on + strandat 1070.356 kb on - strandat 1070.356 kb on - strandat 1070.356 kb on - strandat 1070.356 kb on - strandat 1070.381 kb on - strandat 1070.393 kb on + strandat 1070.393 kb on + strandat 1070.394 kb on - strandat 1070.394 kb on - strandat 1070.394 kb on - strandat 1070.411 kb on - strandat 1070.415 kb on - strand, within IAI46_04970at 1070.415 kb on - strand, within IAI46_04970at 1070.441 kb on + strand, within IAI46_04970at 1070.501 kb on + strand, within IAI46_04970at 1070.501 kb on + strand, within IAI46_04970at 1070.502 kb on - strand, within IAI46_04970at 1070.502 kb on - strand, within IAI46_04970at 1070.642 kb on + strand, within IAI46_04970at 1070.722 kb on + strandat 1070.723 kb on - strandat 1070.736 kb on + strandat 1070.882 kb on + strand, within IAI46_04975at 1070.882 kb on + strand, within IAI46_04975at 1070.883 kb on - strand, within IAI46_04975at 1070.949 kb on + strand, within IAI46_04975at 1070.949 kb on + strand, within IAI46_04975at 1071.079 kb on + strand, within IAI46_04975at 1071.084 kb on + strand, within IAI46_04975at 1071.084 kb on + strand, within IAI46_04975at 1071.084 kb on + strand, within IAI46_04975at 1071.084 kb on + strand, within IAI46_04975at 1071.085 kb on - strand, within IAI46_04975at 1071.085 kb on - strand, within IAI46_04975at 1071.186 kb on - strand, within IAI46_04975at 1071.192 kb on + strand, within IAI46_04975at 1071.192 kb on + strand, within IAI46_04975at 1071.192 kb on + strand, within IAI46_04975at 1071.192 kb on + strand, within IAI46_04975at 1071.193 kb on - strand, within IAI46_04975at 1071.193 kb on - strand, within IAI46_04975at 1071.220 kb on + strand, within IAI46_04975at 1071.237 kb on + strand, within IAI46_04975at 1071.237 kb on + strand, within IAI46_04975at 1071.238 kb on - strand, within IAI46_04975at 1071.361 kb on + strandat 1071.362 kb on - strandat 1071.362 kb on - strandat 1071.362 kb on - strandat 1071.403 kb on + strandat 1071.403 kb on + strandat 1071.403 kb on + strandat 1071.404 kb on - strandat 1071.404 kb on - strandat 1071.404 kb on - strandat 1071.404 kb on - strandat 1071.404 kb on - strandat 1071.406 kb on + strandat 1071.407 kb on - strandat 1071.453 kb on - strandat 1071.453 kb on - strandat 1071.457 kb on - strandat 1071.457 kb on - strandat 1071.457 kb on - strandat 1071.531 kb on - strand, within IAI46_04980at 1071.531 kb on - strand, within IAI46_04980at 1071.560 kb on + strand, within IAI46_04980at 1071.575 kb on - strand, within IAI46_04980at 1071.579 kb on - strand, within IAI46_04980at 1071.592 kb on + strand, within IAI46_04980at 1071.593 kb on - strand, within IAI46_04980at 1071.598 kb on - strand, within IAI46_04980at 1071.598 kb on - strand, within IAI46_04980at 1071.664 kb on + strand, within IAI46_04980at 1071.665 kb on - strand, within IAI46_04980at 1071.701 kb on + strand, within IAI46_04980

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,069,473 - +0.1
1,069,481 + +0.2
1,069,482 - +0.3
1,069,482 - +0.1
1,069,548 + +0.7
1,069,549 - +1.3
1,069,610 + IAI46_04965 0.16 +0.4
1,069,668 - IAI46_04965 0.22 +0.9
1,069,674 - IAI46_04965 0.23 -0.4
1,069,717 - IAI46_04965 0.28 +0.1
1,069,731 - IAI46_04965 0.29 +0.5
1,069,864 - IAI46_04965 0.44 -0.3
1,069,965 - IAI46_04965 0.55 +0.5
1,069,986 - IAI46_04965 0.58 +0.1
1,069,986 - IAI46_04965 0.58 +0.1
1,069,986 - IAI46_04965 0.58 +2.1
1,070,007 - IAI46_04965 0.60 +0.0
1,070,058 + IAI46_04965 0.66 +0.8
1,070,059 - IAI46_04965 0.66 -0.1
1,070,060 + IAI46_04965 0.66 +2.4
1,070,100 - IAI46_04965 0.71 +0.7
1,070,100 - IAI46_04965 0.71 +0.8
1,070,110 + IAI46_04965 0.72 +1.1
1,070,134 + IAI46_04965 0.74 -0.5
1,070,189 + IAI46_04965 0.81 +0.5
1,070,190 - IAI46_04965 0.81 -1.4
1,070,190 - IAI46_04965 0.81 -0.2
1,070,190 - IAI46_04965 0.81 +0.7
1,070,190 - IAI46_04965 0.81 +0.3
1,070,190 - IAI46_04965 0.81 -0.9
1,070,334 + +0.1
1,070,339 - +1.2
1,070,339 - +1.0
1,070,355 + +1.1
1,070,355 + +1.5
1,070,356 - +0.0
1,070,356 - +1.3
1,070,356 - +0.3
1,070,356 - +0.2
1,070,381 - +1.5
1,070,393 + +0.1
1,070,393 + -0.1
1,070,394 - +0.3
1,070,394 - +0.0
1,070,394 - +0.4
1,070,411 - +0.1
1,070,415 - IAI46_04970 0.11 +0.4
1,070,415 - IAI46_04970 0.11 +0.0
1,070,441 + IAI46_04970 0.18 +0.5
1,070,501 + IAI46_04970 0.36 +1.7
1,070,501 + IAI46_04970 0.36 +2.4
1,070,502 - IAI46_04970 0.36 +1.7
1,070,502 - IAI46_04970 0.36 +0.3
1,070,642 + IAI46_04970 0.78 +1.4
1,070,722 + +0.1
1,070,723 - -0.2
1,070,736 + -0.1
1,070,882 + IAI46_04975 0.27 -2.2
1,070,882 + IAI46_04975 0.27 -0.2
1,070,883 - IAI46_04975 0.27 +1.2
1,070,949 + IAI46_04975 0.38 +0.9
1,070,949 + IAI46_04975 0.38 +0.8
1,071,079 + IAI46_04975 0.59 +0.2
1,071,084 + IAI46_04975 0.60 +0.5
1,071,084 + IAI46_04975 0.60 +1.1
1,071,084 + IAI46_04975 0.60 +0.5
1,071,084 + IAI46_04975 0.60 -0.8
1,071,085 - IAI46_04975 0.60 +1.1
1,071,085 - IAI46_04975 0.60 +1.1
1,071,186 - IAI46_04975 0.76 +0.3
1,071,192 + IAI46_04975 0.77 +0.9
1,071,192 + IAI46_04975 0.77 +0.8
1,071,192 + IAI46_04975 0.77 +1.5
1,071,192 + IAI46_04975 0.77 +0.8
1,071,193 - IAI46_04975 0.78 +1.7
1,071,193 - IAI46_04975 0.78 +0.5
1,071,220 + IAI46_04975 0.82 +1.3
1,071,237 + IAI46_04975 0.85 -0.7
1,071,237 + IAI46_04975 0.85 +0.1
1,071,238 - IAI46_04975 0.85 +1.0
1,071,361 + +1.1
1,071,362 - +0.2
1,071,362 - +0.1
1,071,362 - +0.0
1,071,403 + +0.9
1,071,403 + -0.5
1,071,403 + +0.9
1,071,404 - +1.9
1,071,404 - +0.9
1,071,404 - +0.3
1,071,404 - +0.4
1,071,404 - +0.7
1,071,406 + +0.1
1,071,407 - +0.7
1,071,453 - -0.2
1,071,453 - +0.5
1,071,457 - -0.2
1,071,457 - +0.8
1,071,457 - +1.7
1,071,531 - IAI46_04980 0.11 +1.5
1,071,531 - IAI46_04980 0.11 +1.5
1,071,560 + IAI46_04980 0.12 +0.0
1,071,575 - IAI46_04980 0.13 +0.7
1,071,579 - IAI46_04980 0.13 +0.1
1,071,592 + IAI46_04980 0.14 +0.7
1,071,593 - IAI46_04980 0.14 -0.1
1,071,598 - IAI46_04980 0.14 +0.6
1,071,598 - IAI46_04980 0.14 +0.3
1,071,664 + IAI46_04980 0.17 -1.2
1,071,665 - IAI46_04980 0.17 -0.7
1,071,701 + IAI46_04980 0.19 +1.4

Or see this region's nucleotide sequence