Strain Fitness in Serratia liquefaciens MT49 around IAI46_04755

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04745 and IAI46_04750 overlap by 26 nucleotidesIAI46_04750 and IAI46_04755 are separated by 211 nucleotidesIAI46_04755 and IAI46_04760 are separated by 256 nucleotides IAI46_04745: IAI46_04745 - carbohydrate kinase family protein, at 1,017,082 to 1,018,095 _04745 IAI46_04750: IAI46_04750 - response regulator transcription factor, at 1,018,070 to 1,018,810 _04750 IAI46_04755: IAI46_04755 - fructokinase, at 1,019,022 to 1,019,930 _04755 IAI46_04760: IAI46_04760 - PRD domain-containing protein, at 1,020,187 to 1,021,029 _04760 Position (kb) 1019 1020Strain fitness (log2 ratio) -2 -1 0 1 2at 1018.029 kb on + strandat 1018.201 kb on + strand, within IAI46_04750at 1018.266 kb on - strand, within IAI46_04750at 1018.283 kb on + strand, within IAI46_04750at 1018.306 kb on - strand, within IAI46_04750at 1018.509 kb on + strand, within IAI46_04750at 1018.510 kb on - strand, within IAI46_04750at 1018.510 kb on - strand, within IAI46_04750at 1018.613 kb on + strand, within IAI46_04750at 1018.613 kb on + strand, within IAI46_04750at 1018.614 kb on - strand, within IAI46_04750at 1018.724 kb on + strand, within IAI46_04750at 1018.724 kb on + strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.796 kb on + strandat 1018.796 kb on + strandat 1018.828 kb on + strandat 1018.846 kb on + strandat 1018.852 kb on + strandat 1018.852 kb on + strandat 1018.977 kb on + strandat 1018.977 kb on + strandat 1018.977 kb on + strandat 1018.978 kb on - strandat 1018.983 kb on - strandat 1018.983 kb on - strandat 1018.989 kb on + strandat 1018.990 kb on - strandat 1018.990 kb on - strandat 1018.990 kb on - strandat 1019.106 kb on - strandat 1019.106 kb on - strandat 1019.127 kb on + strand, within IAI46_04755at 1019.180 kb on + strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.408 kb on + strand, within IAI46_04755at 1019.409 kb on - strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.571 kb on - strand, within IAI46_04755at 1019.582 kb on + strand, within IAI46_04755at 1019.582 kb on + strand, within IAI46_04755at 1019.744 kb on + strand, within IAI46_04755at 1019.745 kb on - strand, within IAI46_04755at 1019.780 kb on + strand, within IAI46_04755at 1019.803 kb on - strand, within IAI46_04755at 1019.897 kb on - strandat 1019.964 kb on + strandat 1019.964 kb on + strandat 1019.964 kb on + strandat 1019.979 kb on - strandat 1020.006 kb on - strandat 1020.006 kb on - strandat 1020.006 kb on - strandat 1020.009 kb on + strandat 1020.009 kb on + strandat 1020.010 kb on - strandat 1020.010 kb on - strandat 1020.014 kb on + strandat 1020.014 kb on + strandat 1020.014 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.189 kb on - strandat 1020.344 kb on + strand, within IAI46_04760at 1020.428 kb on + strand, within IAI46_04760at 1020.428 kb on + strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.478 kb on - strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.508 kb on - strand, within IAI46_04760at 1020.508 kb on - strand, within IAI46_04760at 1020.748 kb on - strand, within IAI46_04760at 1020.748 kb on - strand, within IAI46_04760at 1020.749 kb on + strand, within IAI46_04760at 1020.750 kb on - strand, within IAI46_04760at 1020.750 kb on - strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.760 kb on - strand, within IAI46_04760at 1020.760 kb on - strand, within IAI46_04760at 1020.852 kb on + strand, within IAI46_04760

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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1,018,029 + +0.9
1,018,201 + IAI46_04750 0.18 -0.2
1,018,266 - IAI46_04750 0.26 +0.5
1,018,283 + IAI46_04750 0.29 +0.3
1,018,306 - IAI46_04750 0.32 -0.0
1,018,509 + IAI46_04750 0.59 +0.5
1,018,510 - IAI46_04750 0.59 -0.1
1,018,510 - IAI46_04750 0.59 +0.2
1,018,613 + IAI46_04750 0.73 -0.7
1,018,613 + IAI46_04750 0.73 -0.2
1,018,614 - IAI46_04750 0.73 -0.3
1,018,724 + IAI46_04750 0.88 -0.0
1,018,724 + IAI46_04750 0.88 +0.7
1,018,725 - IAI46_04750 0.88 -0.7
1,018,725 - IAI46_04750 0.88 -0.8
1,018,725 - IAI46_04750 0.88 +0.5
1,018,796 + +0.0
1,018,796 + +0.2
1,018,828 + +0.3
1,018,846 + +0.8
1,018,852 + +0.6
1,018,852 + +1.0
1,018,977 + +0.0
1,018,977 + -0.4
1,018,977 + +0.8
1,018,978 - +0.2
1,018,983 - +0.7
1,018,983 - +0.0
1,018,989 + +0.8
1,018,990 - -0.0
1,018,990 - -0.7
1,018,990 - +0.8
1,019,106 - +0.1
1,019,106 - -1.2
1,019,127 + IAI46_04755 0.12 -0.1
1,019,180 + IAI46_04755 0.17 +1.0
1,019,233 - IAI46_04755 0.23 -0.6
1,019,233 - IAI46_04755 0.23 -0.5
1,019,233 - IAI46_04755 0.23 -0.5
1,019,233 - IAI46_04755 0.23 -0.1
1,019,233 - IAI46_04755 0.23 +0.5
1,019,408 + IAI46_04755 0.42 +0.6
1,019,409 - IAI46_04755 0.43 -0.3
1,019,550 + IAI46_04755 0.58 +0.3
1,019,550 + IAI46_04755 0.58 +0.6
1,019,550 + IAI46_04755 0.58 +0.9
1,019,550 + IAI46_04755 0.58 +1.0
1,019,551 - IAI46_04755 0.58 -0.4
1,019,551 - IAI46_04755 0.58 +0.2
1,019,551 - IAI46_04755 0.58 +0.5
1,019,571 - IAI46_04755 0.60 +0.1
1,019,582 + IAI46_04755 0.62 +0.3
1,019,582 + IAI46_04755 0.62 -0.4
1,019,744 + IAI46_04755 0.79 +0.7
1,019,745 - IAI46_04755 0.80 +0.7
1,019,780 + IAI46_04755 0.83 -0.5
1,019,803 - IAI46_04755 0.86 +0.2
1,019,897 - -1.0
1,019,964 + +0.3
1,019,964 + +0.3
1,019,964 + +0.6
1,019,979 - -0.7
1,020,006 - +1.3
1,020,006 - +0.4
1,020,006 - +0.0
1,020,009 + +0.7
1,020,009 + -1.0
1,020,010 - +1.8
1,020,010 - +0.8
1,020,014 + +0.1
1,020,014 + +0.2
1,020,014 + +0.2
1,020,188 + +0.4
1,020,188 + +0.4
1,020,188 + +0.6
1,020,188 + -0.6
1,020,188 + +1.0
1,020,188 + +0.4
1,020,189 - -0.1
1,020,344 + IAI46_04760 0.19 -0.8
1,020,428 + IAI46_04760 0.29 +1.5
1,020,428 + IAI46_04760 0.29 -0.8
1,020,429 - IAI46_04760 0.29 -0.2
1,020,429 - IAI46_04760 0.29 +0.0
1,020,429 - IAI46_04760 0.29 +1.9
1,020,429 - IAI46_04760 0.29 -0.5
1,020,429 - IAI46_04760 0.29 -0.7
1,020,429 - IAI46_04760 0.29 +0.6
1,020,429 - IAI46_04760 0.29 +0.2
1,020,478 - IAI46_04760 0.35 -0.0
1,020,507 + IAI46_04760 0.38 +0.1
1,020,507 + IAI46_04760 0.38 +0.1
1,020,507 + IAI46_04760 0.38 -0.1
1,020,508 - IAI46_04760 0.38 -2.0
1,020,508 - IAI46_04760 0.38 +0.1
1,020,748 - IAI46_04760 0.67 -0.7
1,020,748 - IAI46_04760 0.67 +0.0
1,020,749 + IAI46_04760 0.67 +1.3
1,020,750 - IAI46_04760 0.67 -1.5
1,020,750 - IAI46_04760 0.67 +0.9
1,020,759 + IAI46_04760 0.68 +1.0
1,020,759 + IAI46_04760 0.68 +0.4
1,020,759 + IAI46_04760 0.68 +0.5
1,020,760 - IAI46_04760 0.68 +0.6
1,020,760 - IAI46_04760 0.68 -0.9
1,020,852 + IAI46_04760 0.79 -0.9

Or see this region's nucleotide sequence