Strain Fitness in Serratia liquefaciens MT49 around IAI46_04430

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04420 and IAI46_04425 are separated by 60 nucleotidesIAI46_04425 and IAI46_04430 are separated by 115 nucleotidesIAI46_04430 and IAI46_04435 are separated by 9 nucleotides IAI46_04420: IAI46_04420 - esterase FrsA, at 945,942 to 947,189 _04420 IAI46_04425: IAI46_04425 - sigma factor-binding protein Crl, at 947,250 to 947,651 _04425 IAI46_04430: IAI46_04430 - glutamate 5-kinase, at 947,767 to 948,870 _04430 IAI46_04435: IAI46_04435 - glutamate-5-semialdehyde dehydrogenase, at 948,880 to 950,133 _04435 Position (kb) 947 948 949Strain fitness (log2 ratio) -2 -1 0 1 2at 946.783 kb on + strand, within IAI46_04420at 946.794 kb on + strand, within IAI46_04420at 946.795 kb on - strand, within IAI46_04420at 946.893 kb on + strand, within IAI46_04420at 946.893 kb on + strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.894 kb on - strand, within IAI46_04420at 946.968 kb on + strand, within IAI46_04420at 946.968 kb on + strand, within IAI46_04420at 946.968 kb on + strand, within IAI46_04420at 946.969 kb on - strand, within IAI46_04420at 946.969 kb on - strand, within IAI46_04420at 947.127 kb on + strandat 947.127 kb on + strandat 947.231 kb on - strandat 947.381 kb on + strand, within IAI46_04425at 947.381 kb on + strand, within IAI46_04425at 947.454 kb on + strand, within IAI46_04425at 947.455 kb on - strand, within IAI46_04425at 947.460 kb on + strand, within IAI46_04425at 947.511 kb on - strand, within IAI46_04425at 947.669 kb on + strandat 947.669 kb on + strandat 947.669 kb on + strandat 947.669 kb on + strandat 947.669 kb on + strandat 947.670 kb on - strandat 947.670 kb on - strandat 947.670 kb on - strandat 947.670 kb on - strandat 947.719 kb on + strandat 947.720 kb on - strandat 947.739 kb on + strandat 947.739 kb on + strandat 947.740 kb on - strandat 947.750 kb on + strandat 947.750 kb on + strandat 947.751 kb on - strandat 947.763 kb on + strandat 947.763 kb on + strandat 947.763 kb on + strandat 947.764 kb on - strandat 947.766 kb on + strandat 947.835 kb on + strandat 947.836 kb on - strandat 947.861 kb on + strandat 947.862 kb on - strandat 948.151 kb on - strand, within IAI46_04430at 948.151 kb on - strand, within IAI46_04430at 948.151 kb on - strand, within IAI46_04430at 948.289 kb on + strand, within IAI46_04430at 948.306 kb on + strand, within IAI46_04430at 948.307 kb on - strand, within IAI46_04430at 948.307 kb on - strand, within IAI46_04430at 948.310 kb on - strand, within IAI46_04430at 948.310 kb on - strand, within IAI46_04430at 948.501 kb on + strand, within IAI46_04430at 948.510 kb on + strand, within IAI46_04430at 948.755 kb on - strand, within IAI46_04430at 948.756 kb on + strand, within IAI46_04430at 948.820 kb on + strandat 948.827 kb on - strandat 948.855 kb on + strandat 948.855 kb on + strandat 948.860 kb on + strandat 948.868 kb on + strandat 948.869 kb on - strandat 948.885 kb on - strandat 949.026 kb on + strand, within IAI46_04435at 949.027 kb on - strand, within IAI46_04435at 949.080 kb on - strand, within IAI46_04435at 949.314 kb on + strand, within IAI46_04435at 949.330 kb on - strand, within IAI46_04435at 949.464 kb on + strand, within IAI46_04435at 949.465 kb on - strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.562 kb on - strand, within IAI46_04435at 949.562 kb on - strand, within IAI46_04435at 949.638 kb on + strand, within IAI46_04435at 949.804 kb on + strand, within IAI46_04435at 949.804 kb on + strand, within IAI46_04435

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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946,783 + IAI46_04420 0.67 +0.5
946,794 + IAI46_04420 0.68 +2.6
946,795 - IAI46_04420 0.68 +0.3
946,893 + IAI46_04420 0.76 +1.7
946,893 + IAI46_04420 0.76 +0.4
946,894 - IAI46_04420 0.76 -0.0
946,894 - IAI46_04420 0.76 -0.1
946,894 - IAI46_04420 0.76 -2.2
946,894 - IAI46_04420 0.76 +0.1
946,894 - IAI46_04420 0.76 +0.1
946,894 - IAI46_04420 0.76 -1.9
946,968 + IAI46_04420 0.82 +0.7
946,968 + IAI46_04420 0.82 -0.2
946,968 + IAI46_04420 0.82 +1.7
946,969 - IAI46_04420 0.82 -0.3
946,969 - IAI46_04420 0.82 +0.9
947,127 + +0.0
947,127 + -0.9
947,231 - -0.1
947,381 + IAI46_04425 0.33 +0.1
947,381 + IAI46_04425 0.33 -0.2
947,454 + IAI46_04425 0.51 +0.3
947,455 - IAI46_04425 0.51 -0.6
947,460 + IAI46_04425 0.52 +0.0
947,511 - IAI46_04425 0.65 +1.0
947,669 + +0.3
947,669 + -0.4
947,669 + -0.1
947,669 + -0.9
947,669 + +0.2
947,670 - +0.2
947,670 - +1.1
947,670 - -0.1
947,670 - -0.9
947,719 + -0.1
947,720 - +0.3
947,739 + -0.2
947,739 + +0.4
947,740 - -1.9
947,750 + +0.7
947,750 + -0.2
947,751 - -1.2
947,763 + -1.2
947,763 + -0.8
947,763 + -1.8
947,764 - -1.4
947,766 + -0.8
947,835 + -0.1
947,836 - -0.9
947,861 + -0.6
947,862 - +0.6
948,151 - IAI46_04430 0.35 +1.0
948,151 - IAI46_04430 0.35 -0.5
948,151 - IAI46_04430 0.35 -0.1
948,289 + IAI46_04430 0.47 -0.6
948,306 + IAI46_04430 0.49 -1.5
948,307 - IAI46_04430 0.49 +0.1
948,307 - IAI46_04430 0.49 -0.7
948,310 - IAI46_04430 0.49 -1.0
948,310 - IAI46_04430 0.49 +0.1
948,501 + IAI46_04430 0.66 -0.2
948,510 + IAI46_04430 0.67 -0.8
948,755 - IAI46_04430 0.89 +0.3
948,756 + IAI46_04430 0.90 -0.3
948,820 + -0.7
948,827 - +2.1
948,855 + -2.7
948,855 + -0.0
948,860 + +1.4
948,868 + +0.7
948,869 - -0.5
948,885 - -1.2
949,026 + IAI46_04435 0.12 -0.5
949,027 - IAI46_04435 0.12 -0.4
949,080 - IAI46_04435 0.16 +1.3
949,314 + IAI46_04435 0.35 -0.8
949,330 - IAI46_04435 0.36 -0.1
949,464 + IAI46_04435 0.47 -0.7
949,465 - IAI46_04435 0.47 +0.1
949,561 + IAI46_04435 0.54 -2.7
949,561 + IAI46_04435 0.54 -1.0
949,561 + IAI46_04435 0.54 -1.6
949,561 + IAI46_04435 0.54 -0.4
949,562 - IAI46_04435 0.54 -1.0
949,562 - IAI46_04435 0.54 -0.2
949,638 + IAI46_04435 0.60 -0.2
949,804 + IAI46_04435 0.74 +0.4
949,804 + IAI46_04435 0.74 -0.5

Or see this region's nucleotide sequence