Strain Fitness in Serratia liquefaciens MT49 around IAI46_03705

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03700 and IAI46_03705 are separated by 275 nucleotidesIAI46_03705 and IAI46_03710 are separated by 187 nucleotides IAI46_03700: IAI46_03700 - aminopeptidase, at 807,491 to 808,567 _03700 IAI46_03705: IAI46_03705 - hypothetical protein, at 808,843 to 809,109 _03705 IAI46_03710: IAI46_03710 - uroporphyrinogen-III C-methyltransferase, at 809,297 to 810,727 _03710 Position (kb) 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2at 807.895 kb on + strand, within IAI46_03700at 807.915 kb on + strand, within IAI46_03700at 807.916 kb on - strand, within IAI46_03700at 807.950 kb on - strand, within IAI46_03700at 807.960 kb on - strand, within IAI46_03700at 807.964 kb on + strand, within IAI46_03700at 807.965 kb on - strand, within IAI46_03700at 807.999 kb on + strand, within IAI46_03700at 808.078 kb on + strand, within IAI46_03700at 808.079 kb on - strand, within IAI46_03700at 808.191 kb on + strand, within IAI46_03700at 808.191 kb on + strand, within IAI46_03700at 808.191 kb on + strand, within IAI46_03700at 808.192 kb on - strand, within IAI46_03700at 808.192 kb on - strand, within IAI46_03700at 808.243 kb on + strand, within IAI46_03700at 808.274 kb on - strand, within IAI46_03700at 808.305 kb on + strand, within IAI46_03700at 808.306 kb on - strand, within IAI46_03700at 808.622 kb on + strandat 808.623 kb on - strandat 808.643 kb on - strandat 808.643 kb on - strandat 808.757 kb on + strandat 808.757 kb on + strandat 808.757 kb on + strandat 808.758 kb on - strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.773 kb on - strandat 808.776 kb on + strandat 808.776 kb on + strandat 808.776 kb on + strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.789 kb on - strandat 808.789 kb on - strandat 808.789 kb on - strandat 808.799 kb on - strandat 808.894 kb on + strand, within IAI46_03705at 808.895 kb on - strand, within IAI46_03705at 808.895 kb on - strand, within IAI46_03705at 808.911 kb on + strand, within IAI46_03705at 808.911 kb on + strand, within IAI46_03705at 808.979 kb on + strand, within IAI46_03705at 808.983 kb on + strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 809.018 kb on + strand, within IAI46_03705at 809.025 kb on + strand, within IAI46_03705at 809.025 kb on + strand, within IAI46_03705at 809.025 kb on + strand, within IAI46_03705at 809.059 kb on - strand, within IAI46_03705at 809.141 kb on + strandat 809.141 kb on + strandat 809.142 kb on - strandat 809.167 kb on + strandat 809.167 kb on + strandat 809.199 kb on - strandat 809.207 kb on - strandat 809.214 kb on + strandat 809.215 kb on - strandat 809.215 kb on - strandat 809.215 kb on - strandat 809.258 kb on - strandat 809.258 kb on - strandat 809.259 kb on + strandat 809.260 kb on - strandat 809.260 kb on - strandat 809.268 kb on + strandat 809.268 kb on + strandat 809.268 kb on + strandat 809.280 kb on + strandat 809.281 kb on - strandat 809.281 kb on - strandat 809.281 kb on - strandat 809.282 kb on + strandat 809.282 kb on + strandat 809.282 kb on + strandat 809.283 kb on - strandat 809.283 kb on - strandat 809.283 kb on - strandat 809.303 kb on + strandat 809.303 kb on + strandat 809.303 kb on + strandat 809.304 kb on - strandat 809.304 kb on - strandat 809.304 kb on - strandat 809.307 kb on + strandat 809.307 kb on + strandat 809.307 kb on + strandat 809.308 kb on - strandat 809.308 kb on - strandat 809.308 kb on - strandat 809.308 kb on - strandat 809.311 kb on + strandat 809.311 kb on + strandat 809.311 kb on + strandat 809.312 kb on - strandat 809.314 kb on - strandat 809.409 kb on + strandat 809.410 kb on - strandat 809.410 kb on - strandat 809.415 kb on + strandat 809.416 kb on - strandat 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 810.045 kb on - strand, within IAI46_03710

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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807,895 + IAI46_03700 0.38 -1.2
807,915 + IAI46_03700 0.39 +0.5
807,916 - IAI46_03700 0.39 +0.2
807,950 - IAI46_03700 0.43 -0.6
807,960 - IAI46_03700 0.44 -0.6
807,964 + IAI46_03700 0.44 -1.1
807,965 - IAI46_03700 0.44 +2.2
807,999 + IAI46_03700 0.47 -0.4
808,078 + IAI46_03700 0.55 +0.2
808,079 - IAI46_03700 0.55 +0.4
808,191 + IAI46_03700 0.65 +0.5
808,191 + IAI46_03700 0.65 -0.1
808,191 + IAI46_03700 0.65 +0.6
808,192 - IAI46_03700 0.65 +0.0
808,192 - IAI46_03700 0.65 +0.3
808,243 + IAI46_03700 0.70 -0.0
808,274 - IAI46_03700 0.73 +0.6
808,305 + IAI46_03700 0.76 +0.7
808,306 - IAI46_03700 0.76 +0.1
808,622 + -0.4
808,623 - -0.3
808,643 - +0.5
808,643 - -0.2
808,757 + -0.2
808,757 + +0.8
808,757 + +0.3
808,758 - -0.3
808,760 + +0.3
808,760 + +0.8
808,773 - +0.5
808,776 + +0.7
808,776 + +0.2
808,776 + +0.1
808,777 - -0.0
808,777 - -0.5
808,777 - +0.3
808,789 - -0.1
808,789 - -0.0
808,789 - -1.4
808,799 - -0.3
808,894 + IAI46_03705 0.19 +0.0
808,895 - IAI46_03705 0.19 +0.0
808,895 - IAI46_03705 0.19 +1.4
808,911 + IAI46_03705 0.25 +0.8
808,911 + IAI46_03705 0.25 +0.1
808,979 + IAI46_03705 0.51 +0.5
808,983 + IAI46_03705 0.52 +0.4
808,984 - IAI46_03705 0.53 -0.8
808,984 - IAI46_03705 0.53 -0.5
808,984 - IAI46_03705 0.53 -0.2
808,984 - IAI46_03705 0.53 -0.3
808,984 - IAI46_03705 0.53 +1.2
809,018 + IAI46_03705 0.66 +1.2
809,025 + IAI46_03705 0.68 +0.7
809,025 + IAI46_03705 0.68 +1.6
809,025 + IAI46_03705 0.68 +0.2
809,059 - IAI46_03705 0.81 +0.1
809,141 + +0.4
809,141 + +0.0
809,142 - +0.3
809,167 + +0.5
809,167 + -0.1
809,199 - -0.3
809,207 - -0.2
809,214 + -0.1
809,215 - +0.3
809,215 - -1.3
809,215 - +0.4
809,258 - +0.2
809,258 - -0.0
809,259 + +0.3
809,260 - -0.3
809,260 - -1.4
809,268 + +0.9
809,268 + +0.2
809,268 + -0.5
809,280 + +0.6
809,281 - +0.2
809,281 - +0.2
809,281 - +0.6
809,282 + -0.1
809,282 + +0.4
809,282 + +0.3
809,283 - -1.1
809,283 - -0.3
809,283 - -0.3
809,303 + +1.0
809,303 + +1.3
809,303 + +0.2
809,304 - +0.6
809,304 - -2.3
809,304 - -0.3
809,307 + +0.2
809,307 + -0.1
809,307 + -0.7
809,308 - +0.4
809,308 - -0.1
809,308 - +0.1
809,308 - +1.1
809,311 + -0.5
809,311 + -0.2
809,311 + +0.8
809,312 - +0.6
809,314 - -0.3
809,409 + -0.0
809,410 - +0.4
809,410 - +0.5
809,415 + +0.5
809,416 - -0.4
809,707 + IAI46_03710 0.29 +0.5
809,707 + IAI46_03710 0.29 +0.5
809,707 + IAI46_03710 0.29 -0.7
809,707 + IAI46_03710 0.29 +0.2
809,707 + IAI46_03710 0.29 +0.6
810,045 - IAI46_03710 0.52 +0.5

Or see this region's nucleotide sequence