Strain Fitness in Serratia liquefaciens MT49 around IAI46_03635

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03630 and IAI46_03635 are separated by 34 nucleotidesIAI46_03635 and IAI46_03640 are separated by 10 nucleotidesIAI46_03640 and IAI46_03645 are separated by 5 nucleotides IAI46_03630: IAI46_03630 - methionine gamma-lyase, at 789,220 to 790,410 _03630 IAI46_03635: IAI46_03635 - histidine ammonia-lyase, at 790,445 to 791,968 _03635 IAI46_03640: IAI46_03640 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 791,979 to 792,836 _03640 IAI46_03645: IAI46_03645 - proline/glycine betaine ABC transporter permease, at 792,842 to 793,687 _03645 Position (kb) 790 791 792Strain fitness (log2 ratio) -2 -1 0 1 2at 789.484 kb on - strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.680 kb on - strand, within IAI46_03630at 789.775 kb on - strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.826 kb on - strand, within IAI46_03630at 789.826 kb on - strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.923 kb on + strand, within IAI46_03630at 790.012 kb on - strand, within IAI46_03630at 790.074 kb on - strand, within IAI46_03630at 790.085 kb on - strand, within IAI46_03630at 790.085 kb on - strand, within IAI46_03630at 790.115 kb on - strand, within IAI46_03630at 790.115 kb on - strand, within IAI46_03630at 790.320 kb on + strandat 790.321 kb on - strandat 790.408 kb on + strandat 790.409 kb on - strandat 790.409 kb on - strandat 790.446 kb on + strandat 790.447 kb on - strandat 790.447 kb on - strandat 790.550 kb on + strandat 790.681 kb on + strand, within IAI46_03635at 790.682 kb on - strand, within IAI46_03635at 790.682 kb on - strand, within IAI46_03635at 790.682 kb on - strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.750 kb on + strand, within IAI46_03635at 790.757 kb on + strand, within IAI46_03635at 790.758 kb on - strand, within IAI46_03635at 790.809 kb on + strand, within IAI46_03635at 790.809 kb on + strand, within IAI46_03635at 791.119 kb on + strand, within IAI46_03635at 791.119 kb on + strand, within IAI46_03635at 791.426 kb on + strand, within IAI46_03635at 791.427 kb on - strand, within IAI46_03635at 791.428 kb on + strand, within IAI46_03635at 791.428 kb on + strand, within IAI46_03635at 791.428 kb on + strand, within IAI46_03635at 791.428 kb on + strand, within IAI46_03635at 791.428 kb on + strand, within IAI46_03635at 791.429 kb on - strand, within IAI46_03635at 791.521 kb on + strand, within IAI46_03635at 791.522 kb on - strand, within IAI46_03635at 791.522 kb on - strand, within IAI46_03635at 791.579 kb on - strand, within IAI46_03635at 791.579 kb on - strand, within IAI46_03635at 791.637 kb on + strand, within IAI46_03635at 791.637 kb on + strand, within IAI46_03635at 791.637 kb on + strand, within IAI46_03635at 791.638 kb on - strand, within IAI46_03635at 791.638 kb on - strand, within IAI46_03635at 791.638 kb on - strand, within IAI46_03635at 791.638 kb on - strand, within IAI46_03635at 791.660 kb on - strand, within IAI46_03635at 791.692 kb on + strand, within IAI46_03635at 791.693 kb on - strand, within IAI46_03635at 791.693 kb on - strand, within IAI46_03635at 791.696 kb on + strand, within IAI46_03635at 791.696 kb on + strand, within IAI46_03635at 791.767 kb on + strand, within IAI46_03635at 791.768 kb on - strand, within IAI46_03635at 791.789 kb on - strand, within IAI46_03635at 791.854 kb on + strandat 791.854 kb on + strandat 791.854 kb on + strandat 791.855 kb on - strandat 792.061 kb on + strandat 792.061 kb on + strandat 792.061 kb on + strandat 792.061 kb on + strandat 792.062 kb on - strandat 792.062 kb on - strandat 792.062 kb on - strandat 792.062 kb on - strandat 792.080 kb on + strand, within IAI46_03640at 792.080 kb on + strand, within IAI46_03640at 792.081 kb on - strand, within IAI46_03640at 792.081 kb on - strand, within IAI46_03640at 792.179 kb on + strand, within IAI46_03640at 792.183 kb on + strand, within IAI46_03640at 792.183 kb on + strand, within IAI46_03640at 792.370 kb on + strand, within IAI46_03640at 792.371 kb on - strand, within IAI46_03640at 792.418 kb on + strand, within IAI46_03640at 792.418 kb on + strand, within IAI46_03640at 792.419 kb on - strand, within IAI46_03640at 792.428 kb on + strand, within IAI46_03640at 792.429 kb on - strand, within IAI46_03640at 792.566 kb on + strand, within IAI46_03640at 792.566 kb on + strand, within IAI46_03640at 792.627 kb on + strand, within IAI46_03640at 792.628 kb on - strand, within IAI46_03640at 792.628 kb on - strand, within IAI46_03640at 792.628 kb on - strand, within IAI46_03640at 792.825 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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789,484 - IAI46_03630 0.22 +1.2
789,679 + IAI46_03630 0.39 +0.1
789,679 + IAI46_03630 0.39 +0.3
789,680 - IAI46_03630 0.39 -0.1
789,775 - IAI46_03630 0.47 +0.6
789,781 + IAI46_03630 0.47 +0.8
789,781 + IAI46_03630 0.47 -0.6
789,782 - IAI46_03630 0.47 +1.1
789,782 - IAI46_03630 0.47 +1.9
789,782 - IAI46_03630 0.47 +0.5
789,782 - IAI46_03630 0.47 +0.1
789,782 - IAI46_03630 0.47 +0.8
789,782 - IAI46_03630 0.47 -1.0
789,825 + IAI46_03630 0.51 +0.1
789,825 + IAI46_03630 0.51 +0.4
789,825 + IAI46_03630 0.51 +0.4
789,825 + IAI46_03630 0.51 -0.5
789,826 - IAI46_03630 0.51 +0.6
789,826 - IAI46_03630 0.51 -0.2
789,827 + IAI46_03630 0.51 +0.2
789,827 + IAI46_03630 0.51 +0.3
789,827 + IAI46_03630 0.51 +1.3
789,827 + IAI46_03630 0.51 +0.5
789,828 - IAI46_03630 0.51 +0.4
789,828 - IAI46_03630 0.51 +0.3
789,828 - IAI46_03630 0.51 +0.3
789,828 - IAI46_03630 0.51 +0.3
789,850 + IAI46_03630 0.53 +0.8
789,850 + IAI46_03630 0.53 +0.1
789,850 + IAI46_03630 0.53 +0.4
789,851 - IAI46_03630 0.53 -0.2
789,851 - IAI46_03630 0.53 +0.4
789,851 - IAI46_03630 0.53 +0.1
789,923 + IAI46_03630 0.59 -0.3
790,012 - IAI46_03630 0.66 +0.4
790,074 - IAI46_03630 0.72 +0.8
790,085 - IAI46_03630 0.73 -0.1
790,085 - IAI46_03630 0.73 +0.8
790,115 - IAI46_03630 0.75 +0.5
790,115 - IAI46_03630 0.75 -1.1
790,320 + +0.0
790,321 - +0.8
790,408 + +0.5
790,409 - -0.3
790,409 - +0.5
790,446 + +0.2
790,447 - +0.6
790,447 - +0.4
790,550 + -0.2
790,681 + IAI46_03635 0.15 +0.2
790,682 - IAI46_03635 0.16 +0.3
790,682 - IAI46_03635 0.16 +0.2
790,682 - IAI46_03635 0.16 +0.4
790,746 + IAI46_03635 0.20 +0.4
790,746 + IAI46_03635 0.20 -0.6
790,746 + IAI46_03635 0.20 -0.1
790,746 + IAI46_03635 0.20 +1.1
790,746 + IAI46_03635 0.20 +0.4
790,746 + IAI46_03635 0.20 +1.0
790,746 + IAI46_03635 0.20 -1.8
790,747 - IAI46_03635 0.20 -0.0
790,747 - IAI46_03635 0.20 -0.9
790,747 - IAI46_03635 0.20 -1.0
790,747 - IAI46_03635 0.20 -0.9
790,747 - IAI46_03635 0.20 +0.0
790,747 - IAI46_03635 0.20 +0.5
790,747 - IAI46_03635 0.20 +1.4
790,747 - IAI46_03635 0.20 +0.6
790,750 + IAI46_03635 0.20 +0.5
790,757 + IAI46_03635 0.20 +0.0
790,758 - IAI46_03635 0.21 +0.6
790,809 + IAI46_03635 0.24 -0.1
790,809 + IAI46_03635 0.24 +1.7
791,119 + IAI46_03635 0.44 +0.0
791,119 + IAI46_03635 0.44 +0.6
791,426 + IAI46_03635 0.64 -0.0
791,427 - IAI46_03635 0.64 +1.2
791,428 + IAI46_03635 0.65 -0.3
791,428 + IAI46_03635 0.65 +0.5
791,428 + IAI46_03635 0.65 +0.4
791,428 + IAI46_03635 0.65 -2.2
791,428 + IAI46_03635 0.65 -1.7
791,429 - IAI46_03635 0.65 -0.4
791,521 + IAI46_03635 0.71 +0.2
791,522 - IAI46_03635 0.71 +0.3
791,522 - IAI46_03635 0.71 +0.3
791,579 - IAI46_03635 0.74 -0.1
791,579 - IAI46_03635 0.74 -1.1
791,637 + IAI46_03635 0.78 +0.1
791,637 + IAI46_03635 0.78 +0.1
791,637 + IAI46_03635 0.78 +0.0
791,638 - IAI46_03635 0.78 -0.3
791,638 - IAI46_03635 0.78 +0.1
791,638 - IAI46_03635 0.78 +0.2
791,638 - IAI46_03635 0.78 -0.0
791,660 - IAI46_03635 0.80 -1.2
791,692 + IAI46_03635 0.82 -1.5
791,693 - IAI46_03635 0.82 -0.3
791,693 - IAI46_03635 0.82 +0.5
791,696 + IAI46_03635 0.82 +0.3
791,696 + IAI46_03635 0.82 -0.6
791,767 + IAI46_03635 0.87 +0.2
791,768 - IAI46_03635 0.87 +0.4
791,789 - IAI46_03635 0.88 +0.4
791,854 + -0.5
791,854 + +0.0
791,854 + +0.5
791,855 - -1.1
792,061 + -0.2
792,061 + -0.1
792,061 + +0.7
792,061 + +0.3
792,062 - -1.0
792,062 - +0.2
792,062 - +0.1
792,062 - +0.3
792,080 + IAI46_03640 0.12 +0.0
792,080 + IAI46_03640 0.12 +1.2
792,081 - IAI46_03640 0.12 +0.4
792,081 - IAI46_03640 0.12 +0.1
792,179 + IAI46_03640 0.23 -0.4
792,183 + IAI46_03640 0.24 +0.2
792,183 + IAI46_03640 0.24 -0.5
792,370 + IAI46_03640 0.46 +0.5
792,371 - IAI46_03640 0.46 +0.3
792,418 + IAI46_03640 0.51 +1.3
792,418 + IAI46_03640 0.51 +0.8
792,419 - IAI46_03640 0.51 -1.8
792,428 + IAI46_03640 0.52 -0.3
792,429 - IAI46_03640 0.52 -0.8
792,566 + IAI46_03640 0.68 -2.0
792,566 + IAI46_03640 0.68 +1.4
792,627 + IAI46_03640 0.76 -0.2
792,628 - IAI46_03640 0.76 -0.6
792,628 - IAI46_03640 0.76 +0.1
792,628 - IAI46_03640 0.76 -1.0
792,825 + -0.9

Or see this region's nucleotide sequence