Strain Fitness in Serratia liquefaciens MT49 around IAI46_03560

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03550 and IAI46_03555 are separated by 89 nucleotidesIAI46_03555 and IAI46_03560 are separated by 58 nucleotidesIAI46_03560 and IAI46_03565 are separated by 226 nucleotidesIAI46_03565 and IAI46_03570 overlap by 1 nucleotides IAI46_03550: IAI46_03550 - H(+)/Cl(-) exchange transporter ClcA, at 768,543 to 769,982 _03550 IAI46_03555: IAI46_03555 - iron-sulfur cluster insertion protein ErpA, at 770,072 to 770,416 _03555 IAI46_03560: IAI46_03560 - hypothetical protein, at 770,475 to 770,723 _03560 IAI46_03565: IAI46_03565 - TRIC cation channel family protein, at 770,950 to 771,564 _03565 IAI46_03570: IAI46_03570 - vitamin B12 ABC transporter substrate-binding protein BtuF, at 771,564 to 772,370 _03570 Position (kb) 770 771Strain fitness (log2 ratio) -1 0 1at 769.524 kb on + strand, within IAI46_03550at 769.524 kb on + strand, within IAI46_03550at 769.524 kb on + strand, within IAI46_03550at 769.713 kb on - strand, within IAI46_03550at 769.713 kb on - strand, within IAI46_03550at 769.819 kb on + strand, within IAI46_03550at 769.819 kb on + strand, within IAI46_03550at 769.819 kb on + strand, within IAI46_03550at 769.820 kb on - strand, within IAI46_03550at 769.823 kb on + strand, within IAI46_03550at 769.823 kb on + strand, within IAI46_03550at 769.823 kb on + strand, within IAI46_03550at 769.823 kb on + strand, within IAI46_03550at 769.824 kb on - strand, within IAI46_03550at 769.824 kb on - strand, within IAI46_03550at 769.824 kb on - strand, within IAI46_03550at 769.824 kb on - strand, within IAI46_03550at 769.824 kb on - strand, within IAI46_03550at 769.824 kb on - strand, within IAI46_03550at 769.875 kb on + strandat 769.875 kb on + strandat 769.876 kb on - strandat 769.876 kb on - strandat 769.876 kb on - strandat 769.885 kb on + strandat 769.886 kb on - strandat 769.900 kb on + strandat 769.901 kb on - strandat 770.011 kb on + strandat 770.017 kb on + strandat 770.017 kb on + strandat 770.432 kb on + strandat 770.435 kb on + strandat 770.435 kb on + strandat 770.436 kb on - strandat 770.477 kb on - strandat 770.484 kb on + strandat 770.485 kb on - strandat 770.537 kb on + strand, within IAI46_03560at 770.549 kb on + strand, within IAI46_03560at 770.549 kb on + strand, within IAI46_03560at 770.549 kb on + strand, within IAI46_03560at 770.549 kb on + strand, within IAI46_03560at 770.550 kb on - strand, within IAI46_03560at 770.550 kb on - strand, within IAI46_03560at 770.607 kb on + strand, within IAI46_03560at 770.608 kb on - strand, within IAI46_03560at 770.608 kb on - strand, within IAI46_03560at 770.608 kb on - strand, within IAI46_03560at 770.618 kb on + strand, within IAI46_03560at 770.619 kb on - strand, within IAI46_03560at 770.619 kb on - strand, within IAI46_03560at 770.619 kb on - strand, within IAI46_03560at 770.619 kb on - strand, within IAI46_03560at 770.626 kb on - strand, within IAI46_03560at 770.668 kb on + strand, within IAI46_03560at 770.692 kb on - strand, within IAI46_03560at 770.692 kb on - strand, within IAI46_03560at 770.703 kb on + strandat 770.704 kb on - strandat 770.704 kb on - strandat 770.704 kb on - strandat 770.708 kb on + strandat 770.725 kb on - strandat 770.725 kb on - strandat 770.725 kb on - strandat 770.753 kb on + strandat 770.754 kb on - strandat 770.861 kb on + strandat 770.862 kb on - strandat 770.864 kb on + strandat 770.878 kb on + strandat 770.900 kb on + strandat 770.900 kb on + strandat 770.901 kb on - strandat 771.013 kb on + strand, within IAI46_03565at 771.085 kb on + strand, within IAI46_03565at 771.085 kb on + strand, within IAI46_03565at 771.086 kb on - strand, within IAI46_03565at 771.102 kb on + strand, within IAI46_03565at 771.102 kb on + strand, within IAI46_03565at 771.202 kb on - strand, within IAI46_03565at 771.202 kb on - strand, within IAI46_03565at 771.214 kb on + strand, within IAI46_03565at 771.215 kb on - strand, within IAI46_03565at 771.215 kb on - strand, within IAI46_03565at 771.243 kb on + strand, within IAI46_03565at 771.243 kb on + strand, within IAI46_03565at 771.243 kb on + strand, within IAI46_03565at 771.244 kb on - strand, within IAI46_03565at 771.244 kb on - strand, within IAI46_03565at 771.306 kb on + strand, within IAI46_03565at 771.307 kb on - strand, within IAI46_03565at 771.347 kb on - strand, within IAI46_03565at 771.509 kb on - strandat 771.543 kb on + strandat 771.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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769,524 + IAI46_03550 0.68 -0.2
769,524 + IAI46_03550 0.68 -0.6
769,524 + IAI46_03550 0.68 -0.6
769,713 - IAI46_03550 0.81 -0.2
769,713 - IAI46_03550 0.81 +1.5
769,819 + IAI46_03550 0.89 +0.4
769,819 + IAI46_03550 0.89 +0.3
769,819 + IAI46_03550 0.89 +0.2
769,820 - IAI46_03550 0.89 +0.2
769,823 + IAI46_03550 0.89 -0.1
769,823 + IAI46_03550 0.89 -1.0
769,823 + IAI46_03550 0.89 +0.4
769,823 + IAI46_03550 0.89 -0.2
769,824 - IAI46_03550 0.89 +0.4
769,824 - IAI46_03550 0.89 +0.5
769,824 - IAI46_03550 0.89 +0.3
769,824 - IAI46_03550 0.89 -0.9
769,824 - IAI46_03550 0.89 +0.6
769,824 - IAI46_03550 0.89 -1.2
769,875 + -0.0
769,875 + +1.0
769,876 - -0.3
769,876 - -0.7
769,876 - -0.3
769,885 + -0.8
769,886 - -0.8
769,900 + -0.1
769,901 - +0.7
770,011 + +0.8
770,017 + +0.6
770,017 + -0.6
770,432 + +0.2
770,435 + -0.7
770,435 + +0.8
770,436 - -0.0
770,477 - +0.1
770,484 + +0.0
770,485 - +0.7
770,537 + IAI46_03560 0.25 -0.4
770,549 + IAI46_03560 0.30 +0.1
770,549 + IAI46_03560 0.30 +0.5
770,549 + IAI46_03560 0.30 -0.8
770,549 + IAI46_03560 0.30 +0.2
770,550 - IAI46_03560 0.30 +0.4
770,550 - IAI46_03560 0.30 -1.6
770,607 + IAI46_03560 0.53 -0.3
770,608 - IAI46_03560 0.53 +0.1
770,608 - IAI46_03560 0.53 +0.1
770,608 - IAI46_03560 0.53 +0.4
770,618 + IAI46_03560 0.57 -0.1
770,619 - IAI46_03560 0.58 +0.5
770,619 - IAI46_03560 0.58 +0.9
770,619 - IAI46_03560 0.58 +0.8
770,619 - IAI46_03560 0.58 +0.9
770,626 - IAI46_03560 0.61 +0.4
770,668 + IAI46_03560 0.78 +0.8
770,692 - IAI46_03560 0.87 +0.1
770,692 - IAI46_03560 0.87 +0.4
770,703 + +0.7
770,704 - +1.0
770,704 - +0.4
770,704 - +0.0
770,708 + +0.1
770,725 - -0.0
770,725 - +0.8
770,725 - +0.5
770,753 + -0.3
770,754 - +0.5
770,861 + +0.4
770,862 - -0.5
770,864 + -0.5
770,878 + +0.4
770,900 + +0.9
770,900 + -0.9
770,901 - -0.5
771,013 + IAI46_03565 0.10 -0.1
771,085 + IAI46_03565 0.22 +0.8
771,085 + IAI46_03565 0.22 -0.8
771,086 - IAI46_03565 0.22 +0.7
771,102 + IAI46_03565 0.25 +0.4
771,102 + IAI46_03565 0.25 +0.4
771,202 - IAI46_03565 0.41 +0.3
771,202 - IAI46_03565 0.41 -0.1
771,214 + IAI46_03565 0.43 +0.4
771,215 - IAI46_03565 0.43 -0.2
771,215 - IAI46_03565 0.43 -0.1
771,243 + IAI46_03565 0.48 +0.3
771,243 + IAI46_03565 0.48 -1.5
771,243 + IAI46_03565 0.48 +1.6
771,244 - IAI46_03565 0.48 +0.8
771,244 - IAI46_03565 0.48 +0.7
771,306 + IAI46_03565 0.58 +0.3
771,307 - IAI46_03565 0.58 +0.3
771,347 - IAI46_03565 0.65 -0.1
771,509 - +1.0
771,543 + +0.2
771,544 - -0.1

Or see this region's nucleotide sequence