Strain Fitness in Serratia liquefaciens MT49 around IAI46_02610

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02600 and IAI46_02605 are separated by 513 nucleotidesIAI46_02605 and IAI46_02610 are separated by 1 nucleotidesIAI46_02610 and IAI46_02615 are separated by 39 nucleotides IAI46_02600: IAI46_02600 - L,D-transpeptidase family protein, at 559,845 to 560,765 _02600 IAI46_02605: IAI46_02605 - biopolymer transporter ExbD, at 561,279 to 561,686 _02605 IAI46_02610: IAI46_02610 - energy transducer TonB, at 561,688 to 562,440 _02610 IAI46_02615: IAI46_02615 - TonB-dependent receptor, at 562,480 to 564,720 _02615 Position (kb) 561 562 563Strain fitness (log2 ratio) -1 0 1 2at 560.753 kb on + strandat 560.796 kb on - strandat 560.817 kb on - strandat 560.949 kb on + strandat 560.949 kb on + strandat 560.949 kb on + strandat 560.950 kb on - strandat 560.950 kb on - strandat 561.042 kb on - strandat 561.065 kb on + strandat 561.075 kb on + strandat 561.076 kb on - strandat 561.076 kb on - strandat 561.089 kb on - strandat 561.133 kb on - strandat 561.140 kb on + strandat 561.140 kb on + strandat 561.141 kb on - strandat 561.142 kb on + strandat 561.142 kb on + strandat 561.143 kb on - strandat 561.143 kb on - strandat 561.143 kb on - strandat 561.236 kb on + strandat 561.245 kb on + strandat 561.245 kb on + strandat 561.245 kb on + strandat 561.246 kb on - strandat 561.248 kb on - strandat 561.284 kb on + strandat 561.284 kb on + strandat 561.285 kb on - strandat 561.378 kb on - strand, within IAI46_02605at 561.579 kb on - strand, within IAI46_02605at 561.691 kb on + strandat 561.691 kb on + strandat 561.691 kb on + strandat 561.691 kb on + strandat 561.691 kb on + strandat 561.691 kb on + strandat 561.692 kb on - strandat 561.692 kb on - strandat 561.692 kb on - strandat 561.692 kb on - strandat 561.692 kb on - strandat 561.692 kb on - strandat 561.692 kb on - strandat 561.799 kb on + strand, within IAI46_02610at 561.800 kb on - strand, within IAI46_02610at 562.154 kb on - strand, within IAI46_02610at 562.300 kb on - strand, within IAI46_02610at 562.350 kb on + strand, within IAI46_02610at 562.350 kb on + strand, within IAI46_02610at 562.451 kb on - strandat 562.507 kb on + strandat 562.507 kb on + strandat 562.508 kb on - strandat 562.585 kb on - strandat 562.708 kb on + strand, within IAI46_02615at 562.708 kb on + strand, within IAI46_02615at 562.708 kb on + strand, within IAI46_02615at 562.709 kb on - strand, within IAI46_02615at 562.765 kb on + strand, within IAI46_02615at 562.765 kb on + strand, within IAI46_02615at 562.765 kb on + strand, within IAI46_02615at 562.766 kb on - strand, within IAI46_02615at 562.840 kb on + strand, within IAI46_02615at 562.850 kb on - strand, within IAI46_02615at 562.977 kb on + strand, within IAI46_02615at 563.059 kb on + strand, within IAI46_02615at 563.059 kb on + strand, within IAI46_02615at 563.161 kb on + strand, within IAI46_02615at 563.161 kb on + strand, within IAI46_02615at 563.161 kb on + strand, within IAI46_02615at 563.162 kb on - strand, within IAI46_02615at 563.162 kb on - strand, within IAI46_02615at 563.162 kb on - strand, within IAI46_02615at 563.162 kb on - strand, within IAI46_02615at 563.203 kb on + strand, within IAI46_02615at 563.204 kb on - strand, within IAI46_02615at 563.204 kb on - strand, within IAI46_02615at 563.217 kb on + strand, within IAI46_02615at 563.227 kb on + strand, within IAI46_02615at 563.227 kb on + strand, within IAI46_02615at 563.227 kb on + strand, within IAI46_02615at 563.227 kb on + strand, within IAI46_02615at 563.227 kb on + strand, within IAI46_02615at 563.228 kb on - strand, within IAI46_02615at 563.228 kb on - strand, within IAI46_02615at 563.228 kb on - strand, within IAI46_02615at 563.275 kb on + strand, within IAI46_02615at 563.321 kb on - strand, within IAI46_02615at 563.324 kb on - strand, within IAI46_02615at 563.338 kb on - strand, within IAI46_02615at 563.416 kb on + strand, within IAI46_02615at 563.417 kb on - strand, within IAI46_02615at 563.419 kb on + strand, within IAI46_02615at 563.419 kb on + strand, within IAI46_02615at 563.419 kb on + strand, within IAI46_02615at 563.419 kb on + strand, within IAI46_02615at 563.419 kb on + strand, within IAI46_02615at 563.419 kb on + strand, within IAI46_02615at 563.420 kb on - strand, within IAI46_02615at 563.422 kb on + strand, within IAI46_02615at 563.422 kb on + strand, within IAI46_02615at 563.423 kb on - strand, within IAI46_02615

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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560,753 + -0.5
560,796 - -0.6
560,817 - -0.9
560,949 + -0.1
560,949 + +0.0
560,949 + -0.2
560,950 - -0.0
560,950 - +1.0
561,042 - +0.2
561,065 + -0.2
561,075 + +0.2
561,076 - -0.3
561,076 - +0.7
561,089 - -1.7
561,133 - +0.2
561,140 + +0.7
561,140 + -0.7
561,141 - +0.6
561,142 + +0.4
561,142 + +0.3
561,143 - +0.1
561,143 - +0.1
561,143 - -0.6
561,236 + -0.1
561,245 + +0.8
561,245 + -0.7
561,245 + +0.4
561,246 - -0.0
561,248 - -0.2
561,284 + -0.1
561,284 + +0.1
561,285 - -0.5
561,378 - IAI46_02605 0.24 +0.3
561,579 - IAI46_02605 0.74 -0.5
561,691 + -0.0
561,691 + +0.7
561,691 + +0.5
561,691 + -0.6
561,691 + -0.3
561,691 + -0.2
561,692 - +0.5
561,692 - +0.3
561,692 - -1.0
561,692 - -0.6
561,692 - -0.3
561,692 - +0.6
561,692 - -0.0
561,799 + IAI46_02610 0.15 -0.1
561,800 - IAI46_02610 0.15 -0.3
562,154 - IAI46_02610 0.62 +1.8
562,300 - IAI46_02610 0.81 -0.8
562,350 + IAI46_02610 0.88 +0.6
562,350 + IAI46_02610 0.88 -0.3
562,451 - -0.7
562,507 + +1.0
562,507 + -0.2
562,508 - +0.0
562,585 - +0.6
562,708 + IAI46_02615 0.10 +0.1
562,708 + IAI46_02615 0.10 +0.2
562,708 + IAI46_02615 0.10 +0.7
562,709 - IAI46_02615 0.10 +0.2
562,765 + IAI46_02615 0.13 +0.0
562,765 + IAI46_02615 0.13 +1.0
562,765 + IAI46_02615 0.13 +0.7
562,766 - IAI46_02615 0.13 -1.1
562,840 + IAI46_02615 0.16 -1.1
562,850 - IAI46_02615 0.17 +0.7
562,977 + IAI46_02615 0.22 +1.1
563,059 + IAI46_02615 0.26 +0.5
563,059 + IAI46_02615 0.26 -0.0
563,161 + IAI46_02615 0.30 +0.1
563,161 + IAI46_02615 0.30 -0.1
563,161 + IAI46_02615 0.30 -0.5
563,162 - IAI46_02615 0.30 +0.2
563,162 - IAI46_02615 0.30 +0.4
563,162 - IAI46_02615 0.30 +0.6
563,162 - IAI46_02615 0.30 -0.3
563,203 + IAI46_02615 0.32 +0.7
563,204 - IAI46_02615 0.32 +0.7
563,204 - IAI46_02615 0.32 -0.2
563,217 + IAI46_02615 0.33 +0.8
563,227 + IAI46_02615 0.33 +0.5
563,227 + IAI46_02615 0.33 -0.1
563,227 + IAI46_02615 0.33 -1.0
563,227 + IAI46_02615 0.33 +0.2
563,227 + IAI46_02615 0.33 +0.6
563,228 - IAI46_02615 0.33 -1.0
563,228 - IAI46_02615 0.33 +0.2
563,228 - IAI46_02615 0.33 +0.1
563,275 + IAI46_02615 0.35 +0.5
563,321 - IAI46_02615 0.38 -0.7
563,324 - IAI46_02615 0.38 +0.4
563,338 - IAI46_02615 0.38 -0.1
563,416 + IAI46_02615 0.42 -0.8
563,417 - IAI46_02615 0.42 +0.5
563,419 + IAI46_02615 0.42 -0.4
563,419 + IAI46_02615 0.42 +0.9
563,419 + IAI46_02615 0.42 +0.3
563,419 + IAI46_02615 0.42 +1.5
563,419 + IAI46_02615 0.42 +0.2
563,419 + IAI46_02615 0.42 -0.3
563,420 - IAI46_02615 0.42 +0.2
563,422 + IAI46_02615 0.42 +0.6
563,422 + IAI46_02615 0.42 +0.4
563,423 - IAI46_02615 0.42 +0.6

Or see this region's nucleotide sequence