Strain Fitness in Serratia liquefaciens MT49 around IAI46_02580

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02575 and IAI46_02580 are separated by 586 nucleotidesIAI46_02580 and IAI46_02585 are separated by 57 nucleotidesIAI46_02585 and IAI46_02590 are separated by 80 nucleotides IAI46_02575: IAI46_02575 - YncE family protein, at 554,591 to 555,667 _02575 IAI46_02580: IAI46_02580 - porin, at 556,254 to 557,390 _02580 IAI46_02585: IAI46_02585 - helix-turn-helix transcriptional regulator, at 557,448 to 558,302 _02585 IAI46_02590: IAI46_02590 - hypothetical protein, at 558,383 to 558,778 _02590 Position (kb) 556 557 558Strain fitness (log2 ratio) -1 0 1 2at 555.256 kb on + strand, within IAI46_02575at 555.257 kb on - strand, within IAI46_02575at 555.298 kb on + strand, within IAI46_02575at 555.299 kb on - strand, within IAI46_02575at 555.322 kb on + strand, within IAI46_02575at 555.323 kb on - strand, within IAI46_02575at 555.389 kb on - strand, within IAI46_02575at 555.438 kb on + strand, within IAI46_02575at 555.486 kb on + strand, within IAI46_02575at 555.487 kb on - strand, within IAI46_02575at 555.510 kb on + strand, within IAI46_02575at 555.510 kb on + strand, within IAI46_02575at 555.523 kb on - strand, within IAI46_02575at 555.667 kb on + strandat 555.668 kb on - strandat 555.721 kb on + strandat 555.936 kb on - strandat 555.972 kb on + strandat 555.987 kb on - strandat 555.994 kb on - strandat 556.012 kb on + strandat 556.050 kb on - strandat 556.070 kb on + strandat 556.070 kb on + strandat 556.071 kb on - strandat 556.071 kb on - strandat 556.189 kb on + strandat 556.190 kb on - strandat 556.219 kb on + strandat 556.219 kb on + strandat 556.252 kb on + strandat 556.264 kb on + strandat 556.277 kb on - strandat 556.400 kb on + strand, within IAI46_02580at 556.401 kb on - strand, within IAI46_02580at 556.401 kb on - strand, within IAI46_02580at 556.421 kb on + strand, within IAI46_02580at 556.421 kb on + strand, within IAI46_02580at 556.421 kb on + strand, within IAI46_02580at 556.422 kb on - strand, within IAI46_02580at 556.422 kb on - strand, within IAI46_02580at 556.422 kb on - strand, within IAI46_02580at 556.422 kb on - strand, within IAI46_02580at 556.447 kb on - strand, within IAI46_02580at 556.448 kb on + strand, within IAI46_02580at 556.449 kb on - strand, within IAI46_02580at 556.494 kb on + strand, within IAI46_02580at 556.494 kb on + strand, within IAI46_02580at 556.495 kb on - strand, within IAI46_02580at 556.495 kb on - strand, within IAI46_02580at 556.530 kb on + strand, within IAI46_02580at 556.531 kb on - strand, within IAI46_02580at 556.578 kb on + strand, within IAI46_02580at 556.578 kb on + strand, within IAI46_02580at 556.579 kb on - strand, within IAI46_02580at 556.615 kb on + strand, within IAI46_02580at 556.616 kb on - strand, within IAI46_02580at 556.617 kb on + strand, within IAI46_02580at 556.617 kb on + strand, within IAI46_02580at 556.617 kb on + strand, within IAI46_02580at 556.618 kb on - strand, within IAI46_02580at 556.618 kb on - strand, within IAI46_02580at 556.652 kb on - strand, within IAI46_02580at 556.677 kb on + strand, within IAI46_02580at 556.677 kb on + strand, within IAI46_02580at 556.678 kb on - strand, within IAI46_02580at 556.678 kb on - strand, within IAI46_02580at 556.697 kb on + strand, within IAI46_02580at 556.776 kb on - strand, within IAI46_02580at 556.797 kb on + strand, within IAI46_02580at 556.798 kb on - strand, within IAI46_02580at 556.798 kb on - strand, within IAI46_02580at 556.798 kb on - strand, within IAI46_02580at 556.825 kb on + strand, within IAI46_02580at 556.825 kb on + strand, within IAI46_02580at 556.827 kb on + strand, within IAI46_02580at 556.827 kb on + strand, within IAI46_02580at 556.827 kb on + strand, within IAI46_02580at 556.828 kb on - strand, within IAI46_02580at 556.828 kb on - strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.836 kb on + strand, within IAI46_02580at 556.841 kb on - strand, within IAI46_02580at 556.871 kb on + strand, within IAI46_02580at 556.918 kb on - strand, within IAI46_02580at 556.919 kb on + strand, within IAI46_02580at 556.919 kb on + strand, within IAI46_02580at 556.936 kb on + strand, within IAI46_02580at 556.936 kb on + strand, within IAI46_02580at 556.937 kb on - strand, within IAI46_02580at 556.954 kb on - strand, within IAI46_02580at 556.954 kb on - strand, within IAI46_02580at 556.959 kb on + strand, within IAI46_02580at 556.959 kb on + strand, within IAI46_02580at 556.960 kb on - strand, within IAI46_02580at 556.989 kb on + strand, within IAI46_02580at 556.989 kb on + strand, within IAI46_02580at 556.989 kb on + strand, within IAI46_02580at 556.991 kb on + strand, within IAI46_02580at 556.991 kb on + strand, within IAI46_02580at 556.992 kb on - strand, within IAI46_02580at 557.005 kb on - strand, within IAI46_02580at 557.055 kb on + strand, within IAI46_02580at 557.056 kb on - strand, within IAI46_02580at 557.057 kb on + strand, within IAI46_02580at 557.076 kb on + strand, within IAI46_02580at 557.077 kb on - strand, within IAI46_02580at 557.077 kb on - strand, within IAI46_02580at 557.088 kb on + strand, within IAI46_02580at 557.088 kb on + strand, within IAI46_02580at 557.088 kb on + strand, within IAI46_02580at 557.089 kb on - strand, within IAI46_02580at 557.111 kb on + strand, within IAI46_02580at 557.111 kb on + strand, within IAI46_02580at 557.112 kb on - strand, within IAI46_02580at 557.112 kb on - strand, within IAI46_02580at 557.112 kb on - strand, within IAI46_02580at 557.149 kb on + strand, within IAI46_02580at 557.149 kb on + strand, within IAI46_02580at 557.150 kb on - strand, within IAI46_02580at 557.150 kb on - strand, within IAI46_02580at 557.166 kb on + strand, within IAI46_02580at 557.169 kb on - strand, within IAI46_02580at 557.174 kb on + strand, within IAI46_02580at 557.177 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.211 kb on + strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.212 kb on - strand, within IAI46_02580at 557.272 kb on - strand, within IAI46_02580at 557.313 kb on + strandat 557.313 kb on + strandat 557.313 kb on + strandat 557.313 kb on + strandat 557.314 kb on - strandat 557.314 kb on - strandat 557.314 kb on - strandat 557.379 kb on + strandat 557.445 kb on - strandat 557.566 kb on + strand, within IAI46_02585at 557.567 kb on - strand, within IAI46_02585at 557.567 kb on - strand, within IAI46_02585at 557.592 kb on + strand, within IAI46_02585at 557.700 kb on - strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.893 kb on + strand, within IAI46_02585at 557.956 kb on + strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 557.958 kb on - strand, within IAI46_02585at 558.010 kb on + strand, within IAI46_02585at 558.010 kb on + strand, within IAI46_02585at 558.134 kb on + strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.135 kb on - strand, within IAI46_02585at 558.136 kb on + strand, within IAI46_02585at 558.137 kb on - strand, within IAI46_02585at 558.349 kb on - strandat 558.390 kb on + strandat 558.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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555,256 + IAI46_02575 0.62 +0.4
555,257 - IAI46_02575 0.62 +0.4
555,298 + IAI46_02575 0.66 +0.2
555,299 - IAI46_02575 0.66 +1.1
555,322 + IAI46_02575 0.68 +1.0
555,323 - IAI46_02575 0.68 +0.5
555,389 - IAI46_02575 0.74 +0.4
555,438 + IAI46_02575 0.79 +0.1
555,486 + IAI46_02575 0.83 -0.1
555,487 - IAI46_02575 0.83 -0.5
555,510 + IAI46_02575 0.85 -0.1
555,510 + IAI46_02575 0.85 +0.1
555,523 - IAI46_02575 0.87 +0.2
555,667 + +0.7
555,668 - +0.9
555,721 + +0.2
555,936 - +1.5
555,972 + +0.9
555,987 - +0.4
555,994 - +1.0
556,012 + -0.4
556,050 - +0.1
556,070 + +2.0
556,070 + +0.0
556,071 - +0.3
556,071 - -0.5
556,189 + -0.1
556,190 - +0.5
556,219 + +0.4
556,219 + +0.8
556,252 + +0.4
556,264 + +0.1
556,277 - +0.7
556,400 + IAI46_02580 0.13 -0.4
556,401 - IAI46_02580 0.13 -0.2
556,401 - IAI46_02580 0.13 -0.3
556,421 + IAI46_02580 0.15 +1.1
556,421 + IAI46_02580 0.15 -0.6
556,421 + IAI46_02580 0.15 +0.6
556,422 - IAI46_02580 0.15 +0.5
556,422 - IAI46_02580 0.15 -1.1
556,422 - IAI46_02580 0.15 +0.1
556,422 - IAI46_02580 0.15 +1.0
556,447 - IAI46_02580 0.17 +0.2
556,448 + IAI46_02580 0.17 -0.5
556,449 - IAI46_02580 0.17 +0.5
556,494 + IAI46_02580 0.21 -0.2
556,494 + IAI46_02580 0.21 -0.3
556,495 - IAI46_02580 0.21 +2.7
556,495 - IAI46_02580 0.21 +0.3
556,530 + IAI46_02580 0.24 +0.0
556,531 - IAI46_02580 0.24 +1.0
556,578 + IAI46_02580 0.28 -0.2
556,578 + IAI46_02580 0.28 +0.0
556,579 - IAI46_02580 0.29 +0.4
556,615 + IAI46_02580 0.32 +0.4
556,616 - IAI46_02580 0.32 +0.0
556,617 + IAI46_02580 0.32 -0.1
556,617 + IAI46_02580 0.32 +0.7
556,617 + IAI46_02580 0.32 -0.3
556,618 - IAI46_02580 0.32 +0.3
556,618 - IAI46_02580 0.32 +0.1
556,652 - IAI46_02580 0.35 +0.0
556,677 + IAI46_02580 0.37 +0.1
556,677 + IAI46_02580 0.37 +0.9
556,678 - IAI46_02580 0.37 +1.0
556,678 - IAI46_02580 0.37 +0.4
556,697 + IAI46_02580 0.39 -0.1
556,776 - IAI46_02580 0.46 +0.3
556,797 + IAI46_02580 0.48 -0.3
556,798 - IAI46_02580 0.48 +0.9
556,798 - IAI46_02580 0.48 -0.0
556,798 - IAI46_02580 0.48 +0.2
556,825 + IAI46_02580 0.50 -1.2
556,825 + IAI46_02580 0.50 -0.2
556,827 + IAI46_02580 0.50 +0.2
556,827 + IAI46_02580 0.50 +0.6
556,827 + IAI46_02580 0.50 +0.4
556,828 - IAI46_02580 0.50 -0.1
556,828 - IAI46_02580 0.50 +0.6
556,836 + IAI46_02580 0.51 +0.1
556,836 + IAI46_02580 0.51 +0.6
556,836 + IAI46_02580 0.51 +0.3
556,836 + IAI46_02580 0.51 +0.6
556,841 - IAI46_02580 0.52 +0.9
556,871 + IAI46_02580 0.54 -1.1
556,918 - IAI46_02580 0.58 +0.5
556,919 + IAI46_02580 0.58 +0.5
556,919 + IAI46_02580 0.58 -0.2
556,936 + IAI46_02580 0.60 +0.6
556,936 + IAI46_02580 0.60 +0.2
556,937 - IAI46_02580 0.60 -0.0
556,954 - IAI46_02580 0.62 -0.1
556,954 - IAI46_02580 0.62 +1.0
556,959 + IAI46_02580 0.62 -1.1
556,959 + IAI46_02580 0.62 +1.1
556,960 - IAI46_02580 0.62 -1.0
556,989 + IAI46_02580 0.65 -0.5
556,989 + IAI46_02580 0.65 +1.3
556,989 + IAI46_02580 0.65 -0.6
556,991 + IAI46_02580 0.65 -1.2
556,991 + IAI46_02580 0.65 +0.2
556,992 - IAI46_02580 0.65 -1.3
557,005 - IAI46_02580 0.66 -0.3
557,055 + IAI46_02580 0.70 +0.5
557,056 - IAI46_02580 0.71 +0.2
557,057 + IAI46_02580 0.71 -0.9
557,076 + IAI46_02580 0.72 +0.3
557,077 - IAI46_02580 0.72 -0.1
557,077 - IAI46_02580 0.72 -0.4
557,088 + IAI46_02580 0.73 +0.4
557,088 + IAI46_02580 0.73 +1.3
557,088 + IAI46_02580 0.73 -0.0
557,089 - IAI46_02580 0.73 +0.5
557,111 + IAI46_02580 0.75 +0.2
557,111 + IAI46_02580 0.75 -1.2
557,112 - IAI46_02580 0.75 +0.6
557,112 - IAI46_02580 0.75 -1.4
557,112 - IAI46_02580 0.75 +1.0
557,149 + IAI46_02580 0.79 +0.4
557,149 + IAI46_02580 0.79 -0.4
557,150 - IAI46_02580 0.79 +1.4
557,150 - IAI46_02580 0.79 -0.5
557,166 + IAI46_02580 0.80 +0.2
557,169 - IAI46_02580 0.80 -0.7
557,174 + IAI46_02580 0.81 -1.4
557,177 + IAI46_02580 0.81 -0.0
557,211 + IAI46_02580 0.84 +0.5
557,211 + IAI46_02580 0.84 -0.5
557,211 + IAI46_02580 0.84 +0.1
557,211 + IAI46_02580 0.84 +0.1
557,212 - IAI46_02580 0.84 -0.0
557,212 - IAI46_02580 0.84 -0.2
557,212 - IAI46_02580 0.84 +0.0
557,212 - IAI46_02580 0.84 +0.2
557,212 - IAI46_02580 0.84 -1.1
557,272 - IAI46_02580 0.90 +0.8
557,313 + -0.0
557,313 + -0.4
557,313 + +0.7
557,313 + -0.2
557,314 - +0.5
557,314 - +0.6
557,314 - -0.0
557,379 + -0.1
557,445 - +0.5
557,566 + IAI46_02585 0.14 +0.2
557,567 - IAI46_02585 0.14 +1.8
557,567 - IAI46_02585 0.14 -0.4
557,592 + IAI46_02585 0.17 -1.6
557,700 - IAI46_02585 0.29 +0.8
557,893 + IAI46_02585 0.52 +0.6
557,893 + IAI46_02585 0.52 -0.4
557,893 + IAI46_02585 0.52 -0.5
557,956 + IAI46_02585 0.59 -0.1
557,958 - IAI46_02585 0.60 +0.5
557,958 - IAI46_02585 0.60 +0.8
557,958 - IAI46_02585 0.60 +0.5
557,958 - IAI46_02585 0.60 -0.2
558,010 + IAI46_02585 0.66 -0.2
558,010 + IAI46_02585 0.66 +0.9
558,134 + IAI46_02585 0.80 +0.9
558,135 - IAI46_02585 0.80 -0.2
558,135 - IAI46_02585 0.80 +1.2
558,135 - IAI46_02585 0.80 +0.0
558,136 + IAI46_02585 0.80 +0.9
558,137 - IAI46_02585 0.81 -0.5
558,349 - +0.3
558,390 + +1.4
558,390 + -0.2

Or see this region's nucleotide sequence