Strain Fitness in Serratia liquefaciens MT49 around IAI46_02275

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02265 and IAI46_02270 are separated by 157 nucleotidesIAI46_02270 and IAI46_02275 are separated by 12 nucleotidesIAI46_02275 and IAI46_02280 are separated by 313 nucleotides IAI46_02265: IAI46_02265 - 2-iminobutanoate/2-iminopropanoate deaminase, at 478,952 to 479,338 _02265 IAI46_02270: IAI46_02270 - aspartate carbamoyltransferase regulatory subunit, at 479,496 to 479,960 _02270 IAI46_02275: IAI46_02275 - aspartate carbamoyltransferase, at 479,973 to 480,908 _02275 IAI46_02280: IAI46_02280 - iron ABC transporter permease, at 481,222 to 482,226 _02280 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1at 479.067 kb on + strand, within IAI46_02265at 479.095 kb on + strand, within IAI46_02265at 479.330 kb on - strandat 479.330 kb on - strandat 479.330 kb on - strandat 479.351 kb on + strandat 479.351 kb on + strandat 479.351 kb on + strandat 479.352 kb on - strandat 479.352 kb on - strandat 479.352 kb on - strandat 479.353 kb on + strandat 479.353 kb on + strandat 479.354 kb on - strandat 479.354 kb on - strandat 479.354 kb on - strandat 479.443 kb on + strandat 479.444 kb on - strandat 479.444 kb on - strandat 479.445 kb on + strandat 479.445 kb on + strandat 479.445 kb on + strandat 479.446 kb on - strandat 479.464 kb on + strandat 479.559 kb on + strand, within IAI46_02270at 479.560 kb on - strand, within IAI46_02270at 479.560 kb on - strand, within IAI46_02270at 479.585 kb on + strand, within IAI46_02270at 479.695 kb on + strand, within IAI46_02270at 479.696 kb on - strand, within IAI46_02270at 479.731 kb on + strand, within IAI46_02270at 479.731 kb on + strand, within IAI46_02270at 479.732 kb on - strand, within IAI46_02270at 479.732 kb on - strand, within IAI46_02270at 479.732 kb on - strand, within IAI46_02270at 479.879 kb on + strand, within IAI46_02270at 479.880 kb on - strand, within IAI46_02270at 479.900 kb on + strand, within IAI46_02270at 479.901 kb on - strand, within IAI46_02270at 480.052 kb on + strandat 480.053 kb on - strandat 480.083 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.229 kb on + strand, within IAI46_02275at 480.230 kb on - strand, within IAI46_02275at 480.230 kb on - strand, within IAI46_02275at 480.314 kb on + strand, within IAI46_02275at 480.317 kb on - strand, within IAI46_02275at 480.317 kb on - strand, within IAI46_02275at 480.613 kb on + strand, within IAI46_02275at 480.614 kb on - strand, within IAI46_02275at 480.614 kb on - strand, within IAI46_02275at 480.869 kb on + strandat 480.872 kb on + strandat 480.872 kb on + strandat 480.872 kb on + strandat 480.873 kb on - strandat 480.873 kb on - strandat 480.873 kb on - strandat 480.881 kb on + strandat 480.881 kb on + strandat 480.881 kb on + strandat 480.881 kb on + strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.882 kb on - strandat 480.893 kb on - strandat 481.006 kb on + strandat 481.006 kb on + strandat 481.007 kb on - strandat 481.007 kb on - strandat 481.120 kb on + strandat 481.121 kb on - strandat 481.122 kb on + strandat 481.123 kb on - strandat 481.151 kb on - strandat 481.198 kb on - strandat 481.278 kb on + strandat 481.348 kb on + strand, within IAI46_02280at 481.349 kb on - strand, within IAI46_02280at 481.357 kb on + strand, within IAI46_02280at 481.357 kb on + strand, within IAI46_02280at 481.357 kb on + strand, within IAI46_02280at 481.430 kb on - strand, within IAI46_02280at 481.445 kb on - strand, within IAI46_02280at 481.468 kb on + strand, within IAI46_02280at 481.469 kb on - strand, within IAI46_02280at 481.562 kb on - strand, within IAI46_02280at 481.597 kb on + strand, within IAI46_02280at 481.597 kb on + strand, within IAI46_02280at 481.618 kb on + strand, within IAI46_02280at 481.681 kb on + strand, within IAI46_02280at 481.682 kb on - strand, within IAI46_02280at 481.695 kb on + strand, within IAI46_02280at 481.721 kb on + strand, within IAI46_02280at 481.721 kb on + strand, within IAI46_02280at 481.721 kb on + strand, within IAI46_02280at 481.809 kb on + strand, within IAI46_02280

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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479,067 + IAI46_02265 0.30 -0.5
479,095 + IAI46_02265 0.37 +0.6
479,330 - +1.0
479,330 - +0.4
479,330 - -0.1
479,351 + -0.8
479,351 + +0.3
479,351 + -0.1
479,352 - +0.3
479,352 - +0.3
479,352 - +0.6
479,353 + +0.1
479,353 + +0.6
479,354 - +0.9
479,354 - +0.3
479,354 - -0.7
479,443 + -1.8
479,444 - +0.1
479,444 - +0.0
479,445 + -1.8
479,445 + +0.2
479,445 + +1.1
479,446 - +1.3
479,464 + -0.3
479,559 + IAI46_02270 0.14 -0.3
479,560 - IAI46_02270 0.14 -0.3
479,560 - IAI46_02270 0.14 -0.2
479,585 + IAI46_02270 0.19 +1.1
479,695 + IAI46_02270 0.43 -0.5
479,696 - IAI46_02270 0.43 -1.3
479,731 + IAI46_02270 0.51 +0.0
479,731 + IAI46_02270 0.51 -0.3
479,732 - IAI46_02270 0.51 -0.3
479,732 - IAI46_02270 0.51 +0.7
479,732 - IAI46_02270 0.51 +0.1
479,879 + IAI46_02270 0.82 +0.6
479,880 - IAI46_02270 0.83 -2.3
479,900 + IAI46_02270 0.87 +0.2
479,901 - IAI46_02270 0.87 +0.2
480,052 + -1.5
480,053 - -0.8
480,083 + IAI46_02275 0.12 -2.3
480,229 + IAI46_02275 0.27 -2.4
480,229 + IAI46_02275 0.27 -1.1
480,229 + IAI46_02275 0.27 -1.0
480,229 + IAI46_02275 0.27 -2.2
480,229 + IAI46_02275 0.27 -1.9
480,230 - IAI46_02275 0.27 -1.5
480,230 - IAI46_02275 0.27 -0.3
480,314 + IAI46_02275 0.36 -1.1
480,317 - IAI46_02275 0.37 -1.7
480,317 - IAI46_02275 0.37 -2.4
480,613 + IAI46_02275 0.68 -2.8
480,614 - IAI46_02275 0.68 -1.1
480,614 - IAI46_02275 0.68 -1.3
480,869 + -0.8
480,872 + -1.6
480,872 + -0.2
480,872 + -2.4
480,873 - -1.3
480,873 - -1.6
480,873 - +0.9
480,881 + -0.7
480,881 + -2.0
480,881 + +0.2
480,881 + -1.3
480,882 - -1.8
480,882 - -2.0
480,882 - -0.1
480,882 - -2.3
480,882 - -0.7
480,893 - -1.3
481,006 + +0.0
481,006 + -2.3
481,007 - -1.7
481,007 - +0.7
481,120 + -1.8
481,121 - -0.2
481,122 + -0.3
481,123 - -0.3
481,151 - -0.7
481,198 - -0.9
481,278 + +0.2
481,348 + IAI46_02280 0.13 +1.1
481,349 - IAI46_02280 0.13 +0.6
481,357 + IAI46_02280 0.13 -0.7
481,357 + IAI46_02280 0.13 -0.1
481,357 + IAI46_02280 0.13 +0.5
481,430 - IAI46_02280 0.21 -0.2
481,445 - IAI46_02280 0.22 +0.3
481,468 + IAI46_02280 0.24 -0.3
481,469 - IAI46_02280 0.25 +0.4
481,562 - IAI46_02280 0.34 +0.6
481,597 + IAI46_02280 0.37 -0.4
481,597 + IAI46_02280 0.37 +0.1
481,618 + IAI46_02280 0.39 -0.3
481,681 + IAI46_02280 0.46 -1.2
481,682 - IAI46_02280 0.46 -1.1
481,695 + IAI46_02280 0.47 -0.1
481,721 + IAI46_02280 0.50 -0.2
481,721 + IAI46_02280 0.50 +0.2
481,721 + IAI46_02280 0.50 +0.4
481,809 + IAI46_02280 0.58 +0.5

Or see this region's nucleotide sequence