Strain Fitness in Serratia liquefaciens MT49 around IAI46_01935

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01930 and IAI46_01935 are separated by 24 nucleotidesIAI46_01935 and IAI46_01940 are separated by 68 nucleotidesIAI46_01940 and IAI46_01945 overlap by 1 nucleotides IAI46_01930: IAI46_01930 - transcription termination/antitermination protein NusA, at 412,304 to 413,812 _01930 IAI46_01935: IAI46_01935 - translation initiation factor IF-2, at 413,837 to 416,524 _01935 IAI46_01940: IAI46_01940 - 30S ribosome-binding factor RbfA, at 416,593 to 417,003 _01940 IAI46_01945: IAI46_01945 - tRNA pseudouridine(55) synthase TruB, at 417,003 to 417,947 _01945 Position (kb) 413 414 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2at 413.395 kb on + strand, within IAI46_01930at 413.395 kb on + strand, within IAI46_01930at 413.461 kb on + strand, within IAI46_01930at 413.527 kb on + strand, within IAI46_01930at 413.686 kb on + strandat 413.743 kb on + strandat 413.782 kb on + strandat 413.782 kb on + strandat 413.782 kb on + strandat 413.785 kb on + strandat 413.785 kb on + strandat 413.785 kb on + strandat 413.785 kb on + strandat 416.528 kb on + strandat 416.541 kb on + strandat 416.948 kb on + strand, within IAI46_01940at 417.001 kb on + strandat 417.001 kb on + strandat 417.002 kb on - strandat 417.032 kb on + strandat 417.032 kb on + strandat 417.098 kb on - strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.108 kb on + strand, within IAI46_01945at 417.109 kb on - strand, within IAI46_01945at 417.109 kb on - strand, within IAI46_01945at 417.110 kb on + strand, within IAI46_01945at 417.237 kb on - strand, within IAI46_01945at 417.263 kb on + strand, within IAI46_01945at 417.264 kb on - strand, within IAI46_01945at 417.379 kb on - strand, within IAI46_01945at 417.379 kb on - strand, within IAI46_01945at 417.394 kb on - strand, within IAI46_01945at 417.394 kb on - strand, within IAI46_01945at 417.411 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.417 kb on + strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.418 kb on - strand, within IAI46_01945at 417.468 kb on + strand, within IAI46_01945at 417.469 kb on - strand, within IAI46_01945

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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413,395 + IAI46_01930 0.72 +1.0
413,395 + IAI46_01930 0.72 +0.0
413,461 + IAI46_01930 0.77 +0.8
413,527 + IAI46_01930 0.81 +0.6
413,686 + -1.9
413,743 + -0.9
413,782 + +1.1
413,782 + +0.1
413,782 + -0.8
413,785 + +0.6
413,785 + +0.2
413,785 + +0.1
413,785 + -0.9
416,528 + -0.1
416,541 + -0.4
416,948 + IAI46_01940 0.86 -1.4
417,001 + +1.0
417,001 + -2.0
417,002 - -0.2
417,032 + +0.2
417,032 + -1.4
417,098 - IAI46_01945 0.10 -1.0
417,108 + IAI46_01945 0.11 +0.7
417,108 + IAI46_01945 0.11 +0.2
417,108 + IAI46_01945 0.11 +0.3
417,109 - IAI46_01945 0.11 +0.3
417,109 - IAI46_01945 0.11 +0.1
417,110 + IAI46_01945 0.11 +0.2
417,237 - IAI46_01945 0.25 -0.2
417,263 + IAI46_01945 0.28 +0.6
417,264 - IAI46_01945 0.28 +2.1
417,379 - IAI46_01945 0.40 -0.4
417,379 - IAI46_01945 0.40 -0.5
417,394 - IAI46_01945 0.41 +0.3
417,394 - IAI46_01945 0.41 +0.7
417,411 + IAI46_01945 0.43 +1.1
417,417 + IAI46_01945 0.44 +0.9
417,417 + IAI46_01945 0.44 +0.8
417,417 + IAI46_01945 0.44 +1.3
417,417 + IAI46_01945 0.44 -0.0
417,417 + IAI46_01945 0.44 -0.1
417,417 + IAI46_01945 0.44 -0.4
417,418 - IAI46_01945 0.44 -0.7
417,418 - IAI46_01945 0.44 -1.1
417,418 - IAI46_01945 0.44 +0.7
417,468 + IAI46_01945 0.49 -0.9
417,469 - IAI46_01945 0.49 +0.9

Or see this region's nucleotide sequence