Strain Fitness in Serratia liquefaciens MT49 around IAI46_01440

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01435 and IAI46_01440 are separated by 12 nucleotidesIAI46_01440 and IAI46_01445 are separated by 695 nucleotides IAI46_01435: IAI46_01435 - trimethylamine-N-oxide reductase TorA, at 315,421 to 317,955 _01435 IAI46_01440: IAI46_01440 - pentaheme c-type cytochrome TorC, at 317,968 to 319,131 _01440 IAI46_01445: IAI46_01445 - TMAO reductase system periplasmic protein TorT, at 319,827 to 320,990 _01445 Position (kb) 317 318 319 320Strain fitness (log2 ratio) -2 -1 0 1 2at 316.988 kb on + strand, within IAI46_01435at 317.018 kb on + strand, within IAI46_01435at 317.058 kb on - strand, within IAI46_01435at 317.078 kb on - strand, within IAI46_01435at 317.078 kb on - strand, within IAI46_01435at 317.083 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.151 kb on + strand, within IAI46_01435at 317.152 kb on - strand, within IAI46_01435at 317.152 kb on - strand, within IAI46_01435at 317.211 kb on + strand, within IAI46_01435at 317.222 kb on + strand, within IAI46_01435at 317.222 kb on + strand, within IAI46_01435at 317.231 kb on + strand, within IAI46_01435at 317.232 kb on - strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.348 kb on + strand, within IAI46_01435at 317.349 kb on - strand, within IAI46_01435at 317.349 kb on - strand, within IAI46_01435at 317.349 kb on - strand, within IAI46_01435at 317.405 kb on + strand, within IAI46_01435at 317.406 kb on - strand, within IAI46_01435at 317.528 kb on + strand, within IAI46_01435at 317.529 kb on - strand, within IAI46_01435at 317.558 kb on + strand, within IAI46_01435at 317.559 kb on - strand, within IAI46_01435at 317.587 kb on + strand, within IAI46_01435at 317.588 kb on - strand, within IAI46_01435at 317.622 kb on + strand, within IAI46_01435at 317.640 kb on + strand, within IAI46_01435at 317.640 kb on + strand, within IAI46_01435at 317.641 kb on - strand, within IAI46_01435at 317.729 kb on + strandat 317.730 kb on - strandat 317.730 kb on - strandat 317.730 kb on - strandat 317.733 kb on + strandat 317.734 kb on - strandat 317.816 kb on - strandat 317.816 kb on - strandat 317.858 kb on - strandat 317.860 kb on + strandat 317.860 kb on + strandat 317.860 kb on + strandat 317.860 kb on + strandat 317.861 kb on - strandat 317.861 kb on - strandat 317.861 kb on - strandat 317.861 kb on - strandat 317.875 kb on + strandat 317.875 kb on + strandat 317.970 kb on - strandat 318.152 kb on + strand, within IAI46_01440at 318.168 kb on - strand, within IAI46_01440at 318.168 kb on - strand, within IAI46_01440at 318.418 kb on + strand, within IAI46_01440at 318.418 kb on + strand, within IAI46_01440at 318.482 kb on + strand, within IAI46_01440at 318.482 kb on + strand, within IAI46_01440at 318.486 kb on + strand, within IAI46_01440at 318.486 kb on + strand, within IAI46_01440at 318.487 kb on - strand, within IAI46_01440at 318.487 kb on - strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.504 kb on + strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.505 kb on - strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.506 kb on + strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.507 kb on - strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.508 kb on + strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.509 kb on - strand, within IAI46_01440at 318.549 kb on + strand, within IAI46_01440at 318.549 kb on + strand, within IAI46_01440at 318.550 kb on - strand, within IAI46_01440at 318.550 kb on - strand, within IAI46_01440at 318.550 kb on - strand, within IAI46_01440at 318.576 kb on + strand, within IAI46_01440at 318.701 kb on + strand, within IAI46_01440at 318.701 kb on + strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.702 kb on - strand, within IAI46_01440at 318.706 kb on - strand, within IAI46_01440at 318.801 kb on + strand, within IAI46_01440at 318.801 kb on + strand, within IAI46_01440at 318.802 kb on - strand, within IAI46_01440at 318.819 kb on + strand, within IAI46_01440at 318.830 kb on + strand, within IAI46_01440at 318.830 kb on + strand, within IAI46_01440at 318.831 kb on - strand, within IAI46_01440at 318.876 kb on + strand, within IAI46_01440at 318.877 kb on - strand, within IAI46_01440at 318.877 kb on - strand, within IAI46_01440at 318.888 kb on + strand, within IAI46_01440at 318.889 kb on - strand, within IAI46_01440at 318.913 kb on + strand, within IAI46_01440at 318.914 kb on - strand, within IAI46_01440at 318.950 kb on + strand, within IAI46_01440at 318.951 kb on - strand, within IAI46_01440at 318.959 kb on + strand, within IAI46_01440at 318.960 kb on - strand, within IAI46_01440at 318.960 kb on - strand, within IAI46_01440at 318.960 kb on - strand, within IAI46_01440at 318.961 kb on + strand, within IAI46_01440at 318.962 kb on - strand, within IAI46_01440at 318.999 kb on + strand, within IAI46_01440at 319.000 kb on - strand, within IAI46_01440at 319.014 kb on + strand, within IAI46_01440at 319.014 kb on + strand, within IAI46_01440at 319.014 kb on + strand, within IAI46_01440at 319.014 kb on + strand, within IAI46_01440at 319.015 kb on - strandat 319.070 kb on - strandat 319.135 kb on + strandat 319.135 kb on + strandat 319.148 kb on + strandat 319.149 kb on - strandat 319.149 kb on - strandat 319.151 kb on + strandat 319.151 kb on + strandat 319.152 kb on - strandat 319.152 kb on - strandat 319.152 kb on - strandat 319.165 kb on + strandat 319.165 kb on + strandat 319.166 kb on - strandat 319.166 kb on - strandat 319.168 kb on + strandat 319.174 kb on - strandat 319.174 kb on - strandat 319.180 kb on + strandat 319.180 kb on + strandat 319.180 kb on + strandat 319.181 kb on - strandat 319.184 kb on + strandat 319.185 kb on - strandat 319.185 kb on - strandat 319.185 kb on - strandat 319.217 kb on + strandat 319.217 kb on + strandat 319.217 kb on + strandat 319.217 kb on + strandat 319.218 kb on - strandat 319.228 kb on - strandat 319.283 kb on + strandat 319.318 kb on + strandat 319.319 kb on - strandat 319.319 kb on - strandat 319.319 kb on - strandat 319.326 kb on + strandat 319.388 kb on + strandat 319.388 kb on + strandat 319.388 kb on + strandat 319.389 kb on - strandat 319.414 kb on + strandat 319.415 kb on - strandat 319.418 kb on - strandat 319.418 kb on - strandat 319.493 kb on + strandat 319.534 kb on + strandat 319.535 kb on - strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.560 kb on + strandat 319.561 kb on - strandat 319.561 kb on - strandat 319.561 kb on - strandat 319.561 kb on - strandat 319.671 kb on + strandat 319.671 kb on + strandat 319.695 kb on - strandat 319.709 kb on + strandat 319.710 kb on - strandat 319.776 kb on - strandat 319.779 kb on - strandat 319.779 kb on - strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.864 kb on + strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.865 kb on - strandat 319.870 kb on + strandat 319.870 kb on + strandat 319.870 kb on + strandat 319.870 kb on + strandat 319.870 kb on + strandat 319.871 kb on - strandat 319.871 kb on - strandat 319.936 kb on - strandat 319.973 kb on - strand, within IAI46_01445at 319.973 kb on - strand, within IAI46_01445at 320.005 kb on - strand, within IAI46_01445at 320.010 kb on + strand, within IAI46_01445at 320.044 kb on - strand, within IAI46_01445

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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316,988 + IAI46_01435 0.62 -1.0
317,018 + IAI46_01435 0.63 +0.2
317,058 - IAI46_01435 0.65 +1.0
317,078 - IAI46_01435 0.65 -0.1
317,078 - IAI46_01435 0.65 +1.1
317,083 + IAI46_01435 0.66 -0.1
317,151 + IAI46_01435 0.68 +0.5
317,151 + IAI46_01435 0.68 +0.9
317,151 + IAI46_01435 0.68 -1.2
317,151 + IAI46_01435 0.68 -0.5
317,151 + IAI46_01435 0.68 -0.1
317,152 - IAI46_01435 0.68 +0.6
317,152 - IAI46_01435 0.68 +1.2
317,211 + IAI46_01435 0.71 +0.5
317,222 + IAI46_01435 0.71 +0.7
317,222 + IAI46_01435 0.71 -0.3
317,231 + IAI46_01435 0.71 -0.2
317,232 - IAI46_01435 0.71 +0.2
317,348 + IAI46_01435 0.76 -0.4
317,348 + IAI46_01435 0.76 +0.3
317,348 + IAI46_01435 0.76 -0.3
317,348 + IAI46_01435 0.76 +0.6
317,349 - IAI46_01435 0.76 -0.6
317,349 - IAI46_01435 0.76 +0.0
317,349 - IAI46_01435 0.76 -0.3
317,405 + IAI46_01435 0.78 +0.4
317,406 - IAI46_01435 0.78 -1.3
317,528 + IAI46_01435 0.83 -0.3
317,529 - IAI46_01435 0.83 -0.1
317,558 + IAI46_01435 0.84 +0.4
317,559 - IAI46_01435 0.84 +0.1
317,587 + IAI46_01435 0.85 +0.2
317,588 - IAI46_01435 0.85 +0.4
317,622 + IAI46_01435 0.87 +0.8
317,640 + IAI46_01435 0.88 +0.9
317,640 + IAI46_01435 0.88 -0.2
317,641 - IAI46_01435 0.88 -0.4
317,729 + +0.3
317,730 - +0.3
317,730 - -0.5
317,730 - +2.0
317,733 + +0.0
317,734 - +0.4
317,816 - +0.9
317,816 - -0.5
317,858 - +0.1
317,860 + -0.3
317,860 + -0.0
317,860 + +0.3
317,860 + +1.0
317,861 - +0.5
317,861 - +0.2
317,861 - -0.2
317,861 - +0.5
317,875 + -0.1
317,875 + +0.7
317,970 - +0.3
318,152 + IAI46_01440 0.16 +0.1
318,168 - IAI46_01440 0.17 +0.7
318,168 - IAI46_01440 0.17 +0.3
318,418 + IAI46_01440 0.39 -0.3
318,418 + IAI46_01440 0.39 +0.4
318,482 + IAI46_01440 0.44 +0.8
318,482 + IAI46_01440 0.44 +0.3
318,486 + IAI46_01440 0.45 -0.4
318,486 + IAI46_01440 0.45 +1.0
318,487 - IAI46_01440 0.45 +0.7
318,487 - IAI46_01440 0.45 -0.2
318,504 + IAI46_01440 0.46 -0.0
318,504 + IAI46_01440 0.46 -0.3
318,504 + IAI46_01440 0.46 +0.1
318,504 + IAI46_01440 0.46 +0.2
318,505 - IAI46_01440 0.46 +0.4
318,505 - IAI46_01440 0.46 +0.9
318,505 - IAI46_01440 0.46 -1.1
318,505 - IAI46_01440 0.46 +0.6
318,505 - IAI46_01440 0.46 +0.8
318,506 + IAI46_01440 0.46 -0.4
318,506 + IAI46_01440 0.46 +1.3
318,506 + IAI46_01440 0.46 +0.2
318,506 + IAI46_01440 0.46 -0.2
318,507 - IAI46_01440 0.46 +1.0
318,507 - IAI46_01440 0.46 +0.3
318,507 - IAI46_01440 0.46 -0.4
318,507 - IAI46_01440 0.46 +0.4
318,508 + IAI46_01440 0.46 -1.5
318,508 + IAI46_01440 0.46 +0.8
318,508 + IAI46_01440 0.46 +0.8
318,508 + IAI46_01440 0.46 +1.7
318,508 + IAI46_01440 0.46 +0.2
318,508 + IAI46_01440 0.46 +0.5
318,508 + IAI46_01440 0.46 -0.4
318,508 + IAI46_01440 0.46 -2.7
318,509 - IAI46_01440 0.46 +0.0
318,509 - IAI46_01440 0.46 +0.5
318,509 - IAI46_01440 0.46 +0.2
318,509 - IAI46_01440 0.46 +0.3
318,549 + IAI46_01440 0.50 +1.0
318,549 + IAI46_01440 0.50 -0.2
318,550 - IAI46_01440 0.50 +0.0
318,550 - IAI46_01440 0.50 +0.6
318,550 - IAI46_01440 0.50 +0.2
318,576 + IAI46_01440 0.52 +0.1
318,701 + IAI46_01440 0.63 -0.4
318,701 + IAI46_01440 0.63 +0.3
318,702 - IAI46_01440 0.63 -0.2
318,702 - IAI46_01440 0.63 -0.3
318,702 - IAI46_01440 0.63 +0.2
318,702 - IAI46_01440 0.63 +0.1
318,702 - IAI46_01440 0.63 -0.2
318,706 - IAI46_01440 0.63 +0.4
318,801 + IAI46_01440 0.72 -0.0
318,801 + IAI46_01440 0.72 +1.0
318,802 - IAI46_01440 0.72 +0.8
318,819 + IAI46_01440 0.73 +1.3
318,830 + IAI46_01440 0.74 -1.3
318,830 + IAI46_01440 0.74 +0.1
318,831 - IAI46_01440 0.74 +0.2
318,876 + IAI46_01440 0.78 -0.6
318,877 - IAI46_01440 0.78 -1.2
318,877 - IAI46_01440 0.78 +0.8
318,888 + IAI46_01440 0.79 -0.2
318,889 - IAI46_01440 0.79 -1.3
318,913 + IAI46_01440 0.81 +0.4
318,914 - IAI46_01440 0.81 +0.2
318,950 + IAI46_01440 0.84 +0.8
318,951 - IAI46_01440 0.84 +1.3
318,959 + IAI46_01440 0.85 +0.7
318,960 - IAI46_01440 0.85 -1.5
318,960 - IAI46_01440 0.85 +1.3
318,960 - IAI46_01440 0.85 +0.4
318,961 + IAI46_01440 0.85 -0.2
318,962 - IAI46_01440 0.85 -0.8
318,999 + IAI46_01440 0.89 -0.9
319,000 - IAI46_01440 0.89 +0.2
319,014 + IAI46_01440 0.90 +0.1
319,014 + IAI46_01440 0.90 +0.3
319,014 + IAI46_01440 0.90 +0.8
319,014 + IAI46_01440 0.90 -0.1
319,015 - -0.3
319,070 - +1.2
319,135 + +0.5
319,135 + -0.3
319,148 + +0.6
319,149 - +0.3
319,149 - +0.3
319,151 + +0.3
319,151 + +0.0
319,152 - -0.1
319,152 - +0.8
319,152 - +0.8
319,165 + +0.5
319,165 + +0.3
319,166 - +0.5
319,166 - -0.6
319,168 + -0.2
319,174 - -0.8
319,174 - +0.6
319,180 + +0.6
319,180 + -0.7
319,180 + +0.4
319,181 - +0.1
319,184 + -0.2
319,185 - +0.6
319,185 - -0.4
319,185 - -0.9
319,217 + +0.6
319,217 + -0.2
319,217 + +0.5
319,217 + -0.0
319,218 - -0.3
319,228 - +1.2
319,283 + -0.2
319,318 + +0.0
319,319 - +0.6
319,319 - +0.6
319,319 - -0.2
319,326 + -1.4
319,388 + -0.5
319,388 + +0.1
319,388 + +0.5
319,389 - +0.7
319,414 + -0.9
319,415 - +1.7
319,418 - +0.4
319,418 - -0.0
319,493 + +0.0
319,534 + -0.8
319,535 - -0.1
319,560 + +0.4
319,560 + -0.5
319,560 + +0.2
319,560 + +1.9
319,560 + +0.3
319,560 + +0.2
319,560 + +0.1
319,560 + +0.7
319,560 + -0.5
319,561 - +0.4
319,561 - -0.6
319,561 - -0.1
319,561 - -0.1
319,671 + +0.7
319,671 + -0.0
319,695 - -0.6
319,709 + +0.4
319,710 - +0.8
319,776 - +0.7
319,779 - +0.2
319,779 - -0.1
319,864 + +1.0
319,864 + -0.3
319,864 + -0.2
319,864 + +1.3
319,864 + +0.2
319,864 + +0.9
319,864 + -0.4
319,864 + +1.0
319,865 - +0.1
319,865 - +0.2
319,865 - +0.6
319,865 - +0.3
319,865 - -0.1
319,865 - +0.1
319,865 - -0.5
319,865 - +0.0
319,870 + -0.2
319,870 + +0.2
319,870 + -0.4
319,870 + -0.0
319,870 + -0.0
319,871 - -0.3
319,871 - +1.7
319,936 - -0.6
319,973 - IAI46_01445 0.13 +0.8
319,973 - IAI46_01445 0.13 +0.4
320,005 - IAI46_01445 0.15 -0.9
320,010 + IAI46_01445 0.16 -0.0
320,044 - IAI46_01445 0.19 -0.6

Or see this region's nucleotide sequence