Strain Fitness in Serratia liquefaciens MT49 around IAI46_00945

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00940 and IAI46_00945 are separated by 59 nucleotidesIAI46_00945 and IAI46_00950 overlap by 14 nucleotides IAI46_00940: IAI46_00940 - RNA polymerase sigma factor RpoH, at 209,995 to 210,852 _00940 IAI46_00945: IAI46_00945 - hypothetical protein, at 210,912 to 212,993 _00945 IAI46_00950: IAI46_00950 - DUF3142 domain-containing protein, at 212,980 to 214,197 _00950 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 209.917 kb on + strandat 210.850 kb on + strandat 210.851 kb on - strandat 210.851 kb on - strandat 210.851 kb on - strandat 210.953 kb on - strandat 210.995 kb on + strandat 210.995 kb on + strandat 210.997 kb on + strandat 210.997 kb on + strandat 210.997 kb on + strandat 210.998 kb on - strandat 210.998 kb on - strandat 210.998 kb on - strandat 211.006 kb on + strandat 211.007 kb on - strandat 211.037 kb on + strandat 211.037 kb on + strandat 211.038 kb on - strandat 211.058 kb on + strandat 211.059 kb on - strandat 211.076 kb on - strandat 211.098 kb on + strandat 211.217 kb on + strand, within IAI46_00945at 211.217 kb on + strand, within IAI46_00945at 211.218 kb on - strand, within IAI46_00945at 211.218 kb on - strand, within IAI46_00945at 211.218 kb on - strand, within IAI46_00945at 211.218 kb on - strand, within IAI46_00945at 211.218 kb on - strand, within IAI46_00945at 211.255 kb on + strand, within IAI46_00945at 211.256 kb on - strand, within IAI46_00945at 211.282 kb on + strand, within IAI46_00945at 211.282 kb on + strand, within IAI46_00945at 211.282 kb on + strand, within IAI46_00945at 211.283 kb on - strand, within IAI46_00945at 211.348 kb on + strand, within IAI46_00945at 211.348 kb on + strand, within IAI46_00945at 211.349 kb on - strand, within IAI46_00945at 211.349 kb on - strand, within IAI46_00945at 211.351 kb on + strand, within IAI46_00945at 211.352 kb on - strand, within IAI46_00945at 211.352 kb on - strand, within IAI46_00945at 211.352 kb on - strand, within IAI46_00945at 211.352 kb on - strand, within IAI46_00945at 211.386 kb on - strand, within IAI46_00945at 211.386 kb on - strand, within IAI46_00945at 211.386 kb on - strand, within IAI46_00945at 211.415 kb on - strand, within IAI46_00945at 211.415 kb on - strand, within IAI46_00945at 211.453 kb on + strand, within IAI46_00945at 211.453 kb on + strand, within IAI46_00945at 211.529 kb on + strand, within IAI46_00945at 211.530 kb on - strand, within IAI46_00945at 211.546 kb on + strand, within IAI46_00945at 211.578 kb on - strand, within IAI46_00945at 211.578 kb on - strand, within IAI46_00945at 211.578 kb on - strand, within IAI46_00945at 211.578 kb on - strand, within IAI46_00945at 211.578 kb on - strand, within IAI46_00945at 211.598 kb on + strand, within IAI46_00945at 211.599 kb on - strand, within IAI46_00945at 211.599 kb on - strand, within IAI46_00945at 211.599 kb on - strand, within IAI46_00945at 211.599 kb on - strand, within IAI46_00945at 211.599 kb on - strand, within IAI46_00945at 211.599 kb on - strand, within IAI46_00945at 211.670 kb on + strand, within IAI46_00945at 211.671 kb on - strand, within IAI46_00945at 211.709 kb on - strand, within IAI46_00945at 211.734 kb on - strand, within IAI46_00945at 211.781 kb on + strand, within IAI46_00945at 211.794 kb on - strand, within IAI46_00945at 211.847 kb on - strand, within IAI46_00945at 211.865 kb on + strand, within IAI46_00945at 211.865 kb on + strand, within IAI46_00945at 211.866 kb on - strand, within IAI46_00945at 211.866 kb on - strand, within IAI46_00945at 211.866 kb on - strand, within IAI46_00945at 212.102 kb on + strand, within IAI46_00945at 212.103 kb on - strand, within IAI46_00945at 212.201 kb on - strand, within IAI46_00945at 212.201 kb on - strand, within IAI46_00945at 212.212 kb on + strand, within IAI46_00945at 212.212 kb on + strand, within IAI46_00945at 212.212 kb on + strand, within IAI46_00945at 212.213 kb on - strand, within IAI46_00945at 212.213 kb on - strand, within IAI46_00945at 212.213 kb on - strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.265 kb on + strand, within IAI46_00945at 212.265 kb on + strand, within IAI46_00945at 212.266 kb on - strand, within IAI46_00945at 212.331 kb on + strand, within IAI46_00945at 212.331 kb on + strand, within IAI46_00945at 212.332 kb on - strand, within IAI46_00945at 212.332 kb on - strand, within IAI46_00945at 212.332 kb on - strand, within IAI46_00945at 212.373 kb on - strand, within IAI46_00945at 212.506 kb on + strand, within IAI46_00945at 212.507 kb on - strand, within IAI46_00945at 212.507 kb on - strand, within IAI46_00945at 212.518 kb on - strand, within IAI46_00945at 212.548 kb on - strand, within IAI46_00945at 212.569 kb on + strand, within IAI46_00945at 212.570 kb on - strand, within IAI46_00945at 212.570 kb on - strand, within IAI46_00945at 212.651 kb on + strand, within IAI46_00945at 212.652 kb on - strand, within IAI46_00945at 212.709 kb on - strand, within IAI46_00945at 212.709 kb on - strand, within IAI46_00945at 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.894 kb on - strandat 212.900 kb on + strandat 212.900 kb on + strandat 212.900 kb on + strandat 212.901 kb on - strandat 212.981 kb on + strandat 213.117 kb on - strand, within IAI46_00950at 213.117 kb on - strand, within IAI46_00950at 213.209 kb on - strand, within IAI46_00950at 213.286 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.564 kb on - strand, within IAI46_00950at 213.572 kb on - strand, within IAI46_00950at 213.622 kb on + strand, within IAI46_00950at 213.623 kb on - strand, within IAI46_00950at 213.709 kb on - strand, within IAI46_00950at 213.768 kb on - strand, within IAI46_00950at 213.787 kb on - strand, within IAI46_00950at 213.856 kb on + strand, within IAI46_00950

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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209,917 + +0.8
210,850 + -0.2
210,851 - +0.4
210,851 - +0.5
210,851 - -0.9
210,953 - +0.7
210,995 + +0.5
210,995 + -0.5
210,997 + +0.3
210,997 + +0.9
210,997 + +0.4
210,998 - +0.4
210,998 - +0.2
210,998 - -1.1
211,006 + +0.4
211,007 - -0.2
211,037 + +0.7
211,037 + +0.2
211,038 - +0.7
211,058 + -1.6
211,059 - +0.8
211,076 - -0.1
211,098 + +0.2
211,217 + IAI46_00945 0.15 -0.5
211,217 + IAI46_00945 0.15 +0.3
211,218 - IAI46_00945 0.15 +0.0
211,218 - IAI46_00945 0.15 -1.3
211,218 - IAI46_00945 0.15 -0.9
211,218 - IAI46_00945 0.15 -0.2
211,218 - IAI46_00945 0.15 +0.0
211,255 + IAI46_00945 0.16 +0.2
211,256 - IAI46_00945 0.17 +1.8
211,282 + IAI46_00945 0.18 +0.7
211,282 + IAI46_00945 0.18 +0.5
211,282 + IAI46_00945 0.18 -0.4
211,283 - IAI46_00945 0.18 +0.1
211,348 + IAI46_00945 0.21 -0.6
211,348 + IAI46_00945 0.21 -0.7
211,349 - IAI46_00945 0.21 +1.3
211,349 - IAI46_00945 0.21 +0.2
211,351 + IAI46_00945 0.21 -0.4
211,352 - IAI46_00945 0.21 +0.1
211,352 - IAI46_00945 0.21 -0.1
211,352 - IAI46_00945 0.21 +0.7
211,352 - IAI46_00945 0.21 +0.6
211,386 - IAI46_00945 0.23 -0.2
211,386 - IAI46_00945 0.23 -0.3
211,386 - IAI46_00945 0.23 +0.6
211,415 - IAI46_00945 0.24 +0.3
211,415 - IAI46_00945 0.24 -0.4
211,453 + IAI46_00945 0.26 +0.3
211,453 + IAI46_00945 0.26 +0.3
211,529 + IAI46_00945 0.30 +1.1
211,530 - IAI46_00945 0.30 -0.4
211,546 + IAI46_00945 0.30 -0.1
211,578 - IAI46_00945 0.32 +0.3
211,578 - IAI46_00945 0.32 -0.5
211,578 - IAI46_00945 0.32 +0.2
211,578 - IAI46_00945 0.32 -0.0
211,578 - IAI46_00945 0.32 +0.5
211,598 + IAI46_00945 0.33 +0.5
211,599 - IAI46_00945 0.33 -0.4
211,599 - IAI46_00945 0.33 -0.0
211,599 - IAI46_00945 0.33 +1.3
211,599 - IAI46_00945 0.33 +0.6
211,599 - IAI46_00945 0.33 +0.8
211,599 - IAI46_00945 0.33 +0.3
211,670 + IAI46_00945 0.36 +1.2
211,671 - IAI46_00945 0.36 -1.9
211,709 - IAI46_00945 0.38 +0.1
211,734 - IAI46_00945 0.39 +0.3
211,781 + IAI46_00945 0.42 -0.7
211,794 - IAI46_00945 0.42 +0.6
211,847 - IAI46_00945 0.45 +1.0
211,865 + IAI46_00945 0.46 -0.5
211,865 + IAI46_00945 0.46 +0.3
211,866 - IAI46_00945 0.46 +0.0
211,866 - IAI46_00945 0.46 +1.2
211,866 - IAI46_00945 0.46 -0.1
212,102 + IAI46_00945 0.57 -0.1
212,103 - IAI46_00945 0.57 +0.4
212,201 - IAI46_00945 0.62 +0.3
212,201 - IAI46_00945 0.62 -0.7
212,212 + IAI46_00945 0.62 -0.4
212,212 + IAI46_00945 0.62 +0.4
212,212 + IAI46_00945 0.62 -0.5
212,213 - IAI46_00945 0.62 +0.5
212,213 - IAI46_00945 0.62 -2.0
212,213 - IAI46_00945 0.62 -0.2
212,263 + IAI46_00945 0.65 +0.3
212,263 + IAI46_00945 0.65 +0.2
212,263 + IAI46_00945 0.65 +0.1
212,263 + IAI46_00945 0.65 +0.4
212,265 + IAI46_00945 0.65 +0.6
212,265 + IAI46_00945 0.65 +0.8
212,266 - IAI46_00945 0.65 +0.9
212,331 + IAI46_00945 0.68 -0.2
212,331 + IAI46_00945 0.68 +1.3
212,332 - IAI46_00945 0.68 -0.5
212,332 - IAI46_00945 0.68 -0.0
212,332 - IAI46_00945 0.68 +1.7
212,373 - IAI46_00945 0.70 +0.6
212,506 + IAI46_00945 0.77 +0.1
212,507 - IAI46_00945 0.77 +0.4
212,507 - IAI46_00945 0.77 +0.3
212,518 - IAI46_00945 0.77 -0.2
212,548 - IAI46_00945 0.79 +0.1
212,569 + IAI46_00945 0.80 +1.1
212,570 - IAI46_00945 0.80 +0.3
212,570 - IAI46_00945 0.80 +0.5
212,651 + IAI46_00945 0.84 +0.5
212,652 - IAI46_00945 0.84 -1.1
212,709 - IAI46_00945 0.86 +0.3
212,709 - IAI46_00945 0.86 -0.0
212,833 + +1.7
212,833 + -0.1
212,833 + -0.3
212,833 + -0.3
212,833 + -0.1
212,833 + +0.3
212,833 + +0.6
212,833 + -0.5
212,833 + +0.4
212,833 + +1.1
212,834 - -0.6
212,834 - +0.3
212,834 - -0.5
212,834 - +0.7
212,834 - +1.2
212,894 - -0.2
212,900 + -0.8
212,900 + +0.4
212,900 + +1.2
212,901 - -0.2
212,981 + -0.6
213,117 - IAI46_00950 0.11 +0.3
213,117 - IAI46_00950 0.11 +0.0
213,209 - IAI46_00950 0.19 -0.1
213,286 + IAI46_00950 0.25 -0.0
213,563 + IAI46_00950 0.48 -0.3
213,563 + IAI46_00950 0.48 -0.5
213,563 + IAI46_00950 0.48 +0.2
213,564 - IAI46_00950 0.48 +0.5
213,572 - IAI46_00950 0.49 +0.5
213,622 + IAI46_00950 0.53 +0.5
213,623 - IAI46_00950 0.53 +0.3
213,709 - IAI46_00950 0.60 -0.1
213,768 - IAI46_00950 0.65 +0.7
213,787 - IAI46_00950 0.66 -0.2
213,856 + IAI46_00950 0.72 +1.1

Or see this region's nucleotide sequence