Strain Fitness in Serratia liquefaciens MT49 around IAI46_00805

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00800 and IAI46_00805 are separated by 365 nucleotidesIAI46_00805 and IAI46_00810 overlap by 11 nucleotides IAI46_00800: IAI46_00800 - glycerol-3-phosphate transporter, at 181,465 to 182,820 _00800 IAI46_00805: IAI46_00805 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 183,186 to 184,829 _00805 IAI46_00810: IAI46_00810 - glycerol-3-phosphate dehydrogenase subunit GlpB, at 184,819 to 186,090 _00810 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1at 182.222 kb on - strand, within IAI46_00800at 182.249 kb on + strand, within IAI46_00800at 182.250 kb on - strand, within IAI46_00800at 182.250 kb on - strand, within IAI46_00800at 182.326 kb on - strand, within IAI46_00800at 182.660 kb on + strand, within IAI46_00800at 182.661 kb on - strand, within IAI46_00800at 182.661 kb on - strand, within IAI46_00800at 182.696 kb on + strandat 182.696 kb on + strandat 182.699 kb on + strandat 182.700 kb on - strandat 182.731 kb on + strandat 182.732 kb on - strandat 182.811 kb on + strandat 182.812 kb on - strandat 182.839 kb on + strandat 182.847 kb on + strandat 182.859 kb on - strandat 183.153 kb on + strandat 183.161 kb on + strandat 183.293 kb on - strandat 183.293 kb on - strandat 183.367 kb on - strand, within IAI46_00805at 183.403 kb on + strand, within IAI46_00805at 183.403 kb on + strand, within IAI46_00805at 183.403 kb on + strand, within IAI46_00805at 183.404 kb on - strand, within IAI46_00805at 183.404 kb on - strand, within IAI46_00805at 183.404 kb on - strand, within IAI46_00805at 183.467 kb on + strand, within IAI46_00805at 183.468 kb on - strand, within IAI46_00805at 183.495 kb on + strand, within IAI46_00805at 183.496 kb on - strand, within IAI46_00805at 183.510 kb on - strand, within IAI46_00805at 183.549 kb on - strand, within IAI46_00805at 183.659 kb on + strand, within IAI46_00805at 183.660 kb on - strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.721 kb on + strand, within IAI46_00805at 183.722 kb on - strand, within IAI46_00805at 183.781 kb on - strand, within IAI46_00805at 183.785 kb on + strand, within IAI46_00805at 183.785 kb on + strand, within IAI46_00805at 183.844 kb on - strand, within IAI46_00805at 183.989 kb on + strand, within IAI46_00805at 183.990 kb on - strand, within IAI46_00805at 184.012 kb on - strand, within IAI46_00805at 184.119 kb on + strand, within IAI46_00805at 184.119 kb on + strand, within IAI46_00805at 184.120 kb on - strand, within IAI46_00805at 184.120 kb on - strand, within IAI46_00805at 184.141 kb on + strand, within IAI46_00805at 184.229 kb on + strand, within IAI46_00805at 184.230 kb on - strand, within IAI46_00805at 184.230 kb on - strand, within IAI46_00805at 184.230 kb on - strand, within IAI46_00805at 184.260 kb on + strand, within IAI46_00805at 184.261 kb on - strand, within IAI46_00805at 184.312 kb on + strand, within IAI46_00805at 184.312 kb on + strand, within IAI46_00805at 184.328 kb on + strand, within IAI46_00805at 184.329 kb on - strand, within IAI46_00805at 184.478 kb on + strand, within IAI46_00805at 184.479 kb on - strand, within IAI46_00805at 184.479 kb on - strand, within IAI46_00805at 184.524 kb on + strand, within IAI46_00805at 184.533 kb on - strand, within IAI46_00805at 184.551 kb on - strand, within IAI46_00805at 184.647 kb on - strand, within IAI46_00805at 184.757 kb on + strandat 184.833 kb on - strandat 184.933 kb on + strandat 184.934 kb on - strandat 185.045 kb on - strand, within IAI46_00810at 185.045 kb on - strand, within IAI46_00810at 185.045 kb on - strand, within IAI46_00810at 185.102 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.344 kb on - strand, within IAI46_00810at 185.344 kb on - strand, within IAI46_00810at 185.344 kb on - strand, within IAI46_00810at 185.399 kb on + strand, within IAI46_00810at 185.400 kb on - strand, within IAI46_00810at 185.400 kb on - strand, within IAI46_00810at 185.403 kb on + strand, within IAI46_00810at 185.403 kb on + strand, within IAI46_00810at 185.414 kb on + strand, within IAI46_00810at 185.638 kb on + strand, within IAI46_00810at 185.652 kb on + strand, within IAI46_00810at 185.710 kb on + strand, within IAI46_00810at 185.711 kb on - strand, within IAI46_00810at 185.713 kb on - strand, within IAI46_00810at 185.713 kb on - strand, within IAI46_00810at 185.782 kb on - strand, within IAI46_00810at 185.810 kb on + strand, within IAI46_00810at 185.810 kb on + strand, within IAI46_00810at 185.811 kb on - strand, within IAI46_00810at 185.811 kb on - strand, within IAI46_00810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
182,222 - IAI46_00800 0.56 -0.8
182,249 + IAI46_00800 0.58 -0.5
182,250 - IAI46_00800 0.58 +0.5
182,250 - IAI46_00800 0.58 +0.3
182,326 - IAI46_00800 0.63 -0.5
182,660 + IAI46_00800 0.88 +0.2
182,661 - IAI46_00800 0.88 +0.6
182,661 - IAI46_00800 0.88 +0.3
182,696 + +1.1
182,696 + +0.3
182,699 + +0.1
182,700 - -1.0
182,731 + +0.4
182,732 - -0.6
182,811 + -0.7
182,812 - +0.6
182,839 + -0.3
182,847 + +0.1
182,859 - -1.0
183,153 + +0.7
183,161 + -0.5
183,293 - +0.1
183,293 - +0.4
183,367 - IAI46_00805 0.11 -0.9
183,403 + IAI46_00805 0.13 +0.1
183,403 + IAI46_00805 0.13 +0.6
183,403 + IAI46_00805 0.13 -0.3
183,404 - IAI46_00805 0.13 +1.1
183,404 - IAI46_00805 0.13 +0.6
183,404 - IAI46_00805 0.13 -0.3
183,467 + IAI46_00805 0.17 +0.6
183,468 - IAI46_00805 0.17 -0.4
183,495 + IAI46_00805 0.19 +0.2
183,496 - IAI46_00805 0.19 -0.7
183,510 - IAI46_00805 0.20 -0.3
183,549 - IAI46_00805 0.22 -0.6
183,659 + IAI46_00805 0.29 +0.7
183,660 - IAI46_00805 0.29 +0.3
183,699 + IAI46_00805 0.31 -0.6
183,699 + IAI46_00805 0.31 -0.4
183,699 + IAI46_00805 0.31 +0.6
183,699 + IAI46_00805 0.31 -0.9
183,700 - IAI46_00805 0.31 +0.3
183,700 - IAI46_00805 0.31 +0.2
183,700 - IAI46_00805 0.31 +0.4
183,700 - IAI46_00805 0.31 +0.1
183,721 + IAI46_00805 0.33 -0.5
183,722 - IAI46_00805 0.33 +0.3
183,781 - IAI46_00805 0.36 -2.0
183,785 + IAI46_00805 0.36 +0.3
183,785 + IAI46_00805 0.36 +0.5
183,844 - IAI46_00805 0.40 -0.2
183,989 + IAI46_00805 0.49 +0.4
183,990 - IAI46_00805 0.49 -0.1
184,012 - IAI46_00805 0.50 -0.4
184,119 + IAI46_00805 0.57 +0.8
184,119 + IAI46_00805 0.57 -0.5
184,120 - IAI46_00805 0.57 +0.1
184,120 - IAI46_00805 0.57 +0.6
184,141 + IAI46_00805 0.58 +0.3
184,229 + IAI46_00805 0.63 -0.6
184,230 - IAI46_00805 0.64 +0.6
184,230 - IAI46_00805 0.64 +0.3
184,230 - IAI46_00805 0.64 -1.0
184,260 + IAI46_00805 0.65 -0.7
184,261 - IAI46_00805 0.65 -0.0
184,312 + IAI46_00805 0.68 +0.1
184,312 + IAI46_00805 0.68 -1.2
184,328 + IAI46_00805 0.69 +0.2
184,329 - IAI46_00805 0.70 +0.8
184,478 + IAI46_00805 0.79 +0.6
184,479 - IAI46_00805 0.79 +1.2
184,479 - IAI46_00805 0.79 +0.5
184,524 + IAI46_00805 0.81 +0.3
184,533 - IAI46_00805 0.82 +0.4
184,551 - IAI46_00805 0.83 +0.6
184,647 - IAI46_00805 0.89 +0.3
184,757 + +0.1
184,833 - -0.9
184,933 + -0.1
184,934 - +0.2
185,045 - IAI46_00810 0.18 +1.1
185,045 - IAI46_00810 0.18 +0.1
185,045 - IAI46_00810 0.18 +0.3
185,102 + IAI46_00810 0.22 +0.1
185,343 + IAI46_00810 0.41 -0.1
185,343 + IAI46_00810 0.41 +0.5
185,343 + IAI46_00810 0.41 -0.3
185,343 + IAI46_00810 0.41 -0.3
185,344 - IAI46_00810 0.41 +0.2
185,344 - IAI46_00810 0.41 +0.6
185,344 - IAI46_00810 0.41 -0.3
185,399 + IAI46_00810 0.46 +0.7
185,400 - IAI46_00810 0.46 +0.7
185,400 - IAI46_00810 0.46 -0.6
185,403 + IAI46_00810 0.46 -0.5
185,403 + IAI46_00810 0.46 +0.4
185,414 + IAI46_00810 0.47 +0.8
185,638 + IAI46_00810 0.64 -0.9
185,652 + IAI46_00810 0.65 +0.4
185,710 + IAI46_00810 0.70 -0.0
185,711 - IAI46_00810 0.70 +0.0
185,713 - IAI46_00810 0.70 -0.6
185,713 - IAI46_00810 0.70 +0.9
185,782 - IAI46_00810 0.76 -0.3
185,810 + IAI46_00810 0.78 +0.6
185,810 + IAI46_00810 0.78 -0.9
185,811 - IAI46_00810 0.78 +0.2
185,811 - IAI46_00810 0.78 +0.7

Or see this region's nucleotide sequence