Strain Fitness in Serratia liquefaciens MT49 around IAI46_00800

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00795 and IAI46_00800 are separated by 83 nucleotidesIAI46_00800 and IAI46_00805 are separated by 365 nucleotides IAI46_00795: IAI46_00795 - glycerophosphodiester phosphodiesterase, at 180,302 to 181,381 _00795 IAI46_00800: IAI46_00800 - glycerol-3-phosphate transporter, at 181,465 to 182,820 _00800 IAI46_00805: IAI46_00805 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 183,186 to 184,829 _00805 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 180.552 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.553 kb on - strand, within IAI46_00795at 180.553 kb on - strand, within IAI46_00795at 180.621 kb on + strand, within IAI46_00795at 180.622 kb on - strand, within IAI46_00795at 180.622 kb on - strand, within IAI46_00795at 180.627 kb on + strand, within IAI46_00795at 180.627 kb on + strand, within IAI46_00795at 180.628 kb on - strand, within IAI46_00795at 180.660 kb on + strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.739 kb on + strand, within IAI46_00795at 180.739 kb on + strand, within IAI46_00795at 180.740 kb on - strand, within IAI46_00795at 180.777 kb on + strand, within IAI46_00795at 180.778 kb on - strand, within IAI46_00795at 180.778 kb on - strand, within IAI46_00795at 180.801 kb on + strand, within IAI46_00795at 180.801 kb on + strand, within IAI46_00795at 180.859 kb on + strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.892 kb on + strand, within IAI46_00795at 180.892 kb on + strand, within IAI46_00795at 180.893 kb on - strand, within IAI46_00795at 180.893 kb on - strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.999 kb on + strand, within IAI46_00795at 181.007 kb on + strand, within IAI46_00795at 181.008 kb on - strand, within IAI46_00795at 181.008 kb on - strand, within IAI46_00795at 181.073 kb on - strand, within IAI46_00795at 181.073 kb on - strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.087 kb on - strand, within IAI46_00795at 181.090 kb on - strand, within IAI46_00795at 181.131 kb on - strand, within IAI46_00795at 181.131 kb on - strand, within IAI46_00795at 181.230 kb on + strand, within IAI46_00795at 181.230 kb on + strand, within IAI46_00795at 181.346 kb on - strandat 181.346 kb on - strandat 181.381 kb on + strandat 181.382 kb on - strandat 181.382 kb on - strandat 181.401 kb on + strandat 181.401 kb on + strandat 181.401 kb on + strandat 181.402 kb on - strandat 181.402 kb on - strandat 181.402 kb on - strandat 181.414 kb on - strandat 181.414 kb on - strandat 181.417 kb on - strandat 181.417 kb on - strandat 181.417 kb on - strandat 181.457 kb on + strandat 181.457 kb on + strandat 181.551 kb on + strandat 181.569 kb on + strandat 181.569 kb on + strandat 181.570 kb on - strandat 181.592 kb on + strandat 181.592 kb on + strandat 181.593 kb on - strandat 181.593 kb on - strandat 181.604 kb on + strand, within IAI46_00800at 181.761 kb on + strand, within IAI46_00800at 181.761 kb on + strand, within IAI46_00800at 181.761 kb on + strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.762 kb on - strand, within IAI46_00800at 181.771 kb on - strand, within IAI46_00800at 181.922 kb on + strand, within IAI46_00800at 181.923 kb on - strand, within IAI46_00800at 181.928 kb on + strand, within IAI46_00800at 181.929 kb on - strand, within IAI46_00800at 181.937 kb on + strand, within IAI46_00800at 181.937 kb on + strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.938 kb on - strand, within IAI46_00800at 181.985 kb on + strand, within IAI46_00800at 182.025 kb on - strand, within IAI46_00800at 182.037 kb on + strand, within IAI46_00800at 182.038 kb on - strand, within IAI46_00800at 182.038 kb on - strand, within IAI46_00800at 182.038 kb on - strand, within IAI46_00800at 182.042 kb on - strand, within IAI46_00800at 182.051 kb on + strand, within IAI46_00800at 182.052 kb on - strand, within IAI46_00800at 182.078 kb on + strand, within IAI46_00800at 182.078 kb on + strand, within IAI46_00800at 182.079 kb on - strand, within IAI46_00800at 182.079 kb on - strand, within IAI46_00800at 182.079 kb on - strand, within IAI46_00800at 182.130 kb on - strand, within IAI46_00800at 182.153 kb on + strand, within IAI46_00800at 182.222 kb on - strand, within IAI46_00800at 182.249 kb on + strand, within IAI46_00800at 182.250 kb on - strand, within IAI46_00800at 182.250 kb on - strand, within IAI46_00800at 182.326 kb on - strand, within IAI46_00800at 182.660 kb on + strand, within IAI46_00800at 182.661 kb on - strand, within IAI46_00800at 182.661 kb on - strand, within IAI46_00800at 182.696 kb on + strandat 182.696 kb on + strandat 182.699 kb on + strandat 182.700 kb on - strandat 182.731 kb on + strandat 182.732 kb on - strandat 182.811 kb on + strandat 182.812 kb on - strandat 182.839 kb on + strandat 182.847 kb on + strandat 182.859 kb on - strandat 183.153 kb on + strandat 183.161 kb on + strandat 183.293 kb on - strandat 183.293 kb on - strandat 183.367 kb on - strand, within IAI46_00805at 183.403 kb on + strand, within IAI46_00805at 183.403 kb on + strand, within IAI46_00805at 183.403 kb on + strand, within IAI46_00805at 183.404 kb on - strand, within IAI46_00805at 183.404 kb on - strand, within IAI46_00805at 183.404 kb on - strand, within IAI46_00805at 183.467 kb on + strand, within IAI46_00805at 183.468 kb on - strand, within IAI46_00805at 183.495 kb on + strand, within IAI46_00805at 183.496 kb on - strand, within IAI46_00805at 183.510 kb on - strand, within IAI46_00805at 183.549 kb on - strand, within IAI46_00805at 183.659 kb on + strand, within IAI46_00805at 183.660 kb on - strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.699 kb on + strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.700 kb on - strand, within IAI46_00805at 183.721 kb on + strand, within IAI46_00805at 183.722 kb on - strand, within IAI46_00805at 183.781 kb on - strand, within IAI46_00805at 183.785 kb on + strand, within IAI46_00805at 183.785 kb on + strand, within IAI46_00805

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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180,552 + IAI46_00795 0.23 +0.7
180,552 + IAI46_00795 0.23 -0.2
180,552 + IAI46_00795 0.23 +0.4
180,553 - IAI46_00795 0.23 +0.5
180,553 - IAI46_00795 0.23 +0.3
180,621 + IAI46_00795 0.30 -0.8
180,622 - IAI46_00795 0.30 +0.2
180,622 - IAI46_00795 0.30 +0.6
180,627 + IAI46_00795 0.30 -0.1
180,627 + IAI46_00795 0.30 -0.4
180,628 - IAI46_00795 0.30 -0.3
180,660 + IAI46_00795 0.33 -1.1
180,682 - IAI46_00795 0.35 -0.1
180,682 - IAI46_00795 0.35 +0.1
180,682 - IAI46_00795 0.35 +0.1
180,682 - IAI46_00795 0.35 +0.4
180,682 - IAI46_00795 0.35 +0.1
180,739 + IAI46_00795 0.40 -0.1
180,739 + IAI46_00795 0.40 -0.6
180,740 - IAI46_00795 0.41 -0.3
180,777 + IAI46_00795 0.44 +1.1
180,778 - IAI46_00795 0.44 -0.1
180,778 - IAI46_00795 0.44 +0.0
180,801 + IAI46_00795 0.46 -0.5
180,801 + IAI46_00795 0.46 -1.8
180,859 + IAI46_00795 0.52 -0.2
180,860 - IAI46_00795 0.52 +0.7
180,860 - IAI46_00795 0.52 -0.2
180,860 - IAI46_00795 0.52 -0.2
180,892 + IAI46_00795 0.55 +0.0
180,892 + IAI46_00795 0.55 +0.2
180,893 - IAI46_00795 0.55 -0.1
180,893 - IAI46_00795 0.55 +0.1
180,955 + IAI46_00795 0.60 -0.2
180,955 + IAI46_00795 0.60 +0.2
180,955 + IAI46_00795 0.60 +0.3
180,955 + IAI46_00795 0.60 -0.2
180,999 + IAI46_00795 0.65 +0.2
181,007 + IAI46_00795 0.65 -0.5
181,008 - IAI46_00795 0.65 +0.2
181,008 - IAI46_00795 0.65 -0.1
181,073 - IAI46_00795 0.71 +1.5
181,073 - IAI46_00795 0.71 -0.1
181,086 + IAI46_00795 0.73 +0.8
181,086 + IAI46_00795 0.73 +1.1
181,086 + IAI46_00795 0.73 +0.7
181,086 + IAI46_00795 0.73 +0.2
181,087 - IAI46_00795 0.73 +0.5
181,090 - IAI46_00795 0.73 -0.1
181,131 - IAI46_00795 0.77 -0.5
181,131 - IAI46_00795 0.77 -0.9
181,230 + IAI46_00795 0.86 +0.3
181,230 + IAI46_00795 0.86 -0.0
181,346 - +0.8
181,346 - +0.4
181,381 + +0.3
181,382 - -0.1
181,382 - -0.0
181,401 + -0.5
181,401 + +0.3
181,401 + +0.6
181,402 - -1.4
181,402 - +0.1
181,402 - -0.5
181,414 - +0.2
181,414 - +0.8
181,417 - +0.4
181,417 - +0.1
181,417 - +0.9
181,457 + -0.1
181,457 + -0.3
181,551 + -0.2
181,569 + +0.4
181,569 + -1.5
181,570 - +0.4
181,592 + +0.4
181,592 + +0.1
181,593 - -0.2
181,593 - +0.3
181,604 + IAI46_00800 0.10 +0.7
181,761 + IAI46_00800 0.22 +2.0
181,761 + IAI46_00800 0.22 +0.3
181,761 + IAI46_00800 0.22 +0.5
181,762 - IAI46_00800 0.22 -0.0
181,762 - IAI46_00800 0.22 -0.4
181,762 - IAI46_00800 0.22 +0.5
181,762 - IAI46_00800 0.22 -0.1
181,762 - IAI46_00800 0.22 -0.8
181,762 - IAI46_00800 0.22 -0.6
181,771 - IAI46_00800 0.23 +0.4
181,922 + IAI46_00800 0.34 +0.7
181,923 - IAI46_00800 0.34 +0.2
181,928 + IAI46_00800 0.34 -0.2
181,929 - IAI46_00800 0.34 +0.1
181,937 + IAI46_00800 0.35 +0.6
181,937 + IAI46_00800 0.35 -0.0
181,938 - IAI46_00800 0.35 +0.1
181,938 - IAI46_00800 0.35 -0.4
181,938 - IAI46_00800 0.35 +0.5
181,938 - IAI46_00800 0.35 -0.5
181,985 + IAI46_00800 0.38 +0.0
182,025 - IAI46_00800 0.41 +0.6
182,037 + IAI46_00800 0.42 +0.6
182,038 - IAI46_00800 0.42 +0.5
182,038 - IAI46_00800 0.42 +2.7
182,038 - IAI46_00800 0.42 +0.1
182,042 - IAI46_00800 0.43 +0.2
182,051 + IAI46_00800 0.43 -0.2
182,052 - IAI46_00800 0.43 -0.1
182,078 + IAI46_00800 0.45 +0.3
182,078 + IAI46_00800 0.45 +0.3
182,079 - IAI46_00800 0.45 +0.9
182,079 - IAI46_00800 0.45 -0.8
182,079 - IAI46_00800 0.45 -0.2
182,130 - IAI46_00800 0.49 -0.3
182,153 + IAI46_00800 0.51 +0.9
182,222 - IAI46_00800 0.56 -0.8
182,249 + IAI46_00800 0.58 -0.5
182,250 - IAI46_00800 0.58 +0.5
182,250 - IAI46_00800 0.58 +0.3
182,326 - IAI46_00800 0.63 -0.5
182,660 + IAI46_00800 0.88 +0.2
182,661 - IAI46_00800 0.88 +0.6
182,661 - IAI46_00800 0.88 +0.3
182,696 + +1.1
182,696 + +0.3
182,699 + +0.1
182,700 - -1.0
182,731 + +0.4
182,732 - -0.6
182,811 + -0.7
182,812 - +0.6
182,839 + -0.3
182,847 + +0.1
182,859 - -1.0
183,153 + +0.7
183,161 + -0.5
183,293 - +0.1
183,293 - +0.4
183,367 - IAI46_00805 0.11 -0.9
183,403 + IAI46_00805 0.13 +0.1
183,403 + IAI46_00805 0.13 +0.6
183,403 + IAI46_00805 0.13 -0.3
183,404 - IAI46_00805 0.13 +1.1
183,404 - IAI46_00805 0.13 +0.6
183,404 - IAI46_00805 0.13 -0.3
183,467 + IAI46_00805 0.17 +0.6
183,468 - IAI46_00805 0.17 -0.4
183,495 + IAI46_00805 0.19 +0.2
183,496 - IAI46_00805 0.19 -0.7
183,510 - IAI46_00805 0.20 -0.3
183,549 - IAI46_00805 0.22 -0.6
183,659 + IAI46_00805 0.29 +0.7
183,660 - IAI46_00805 0.29 +0.3
183,699 + IAI46_00805 0.31 -0.6
183,699 + IAI46_00805 0.31 -0.4
183,699 + IAI46_00805 0.31 +0.6
183,699 + IAI46_00805 0.31 -0.9
183,700 - IAI46_00805 0.31 +0.3
183,700 - IAI46_00805 0.31 +0.2
183,700 - IAI46_00805 0.31 +0.4
183,700 - IAI46_00805 0.31 +0.1
183,721 + IAI46_00805 0.33 -0.5
183,722 - IAI46_00805 0.33 +0.3
183,781 - IAI46_00805 0.36 -2.0
183,785 + IAI46_00805 0.36 +0.3
183,785 + IAI46_00805 0.36 +0.5

Or see this region's nucleotide sequence