Strain Fitness in Serratia liquefaciens MT49 around IAI46_00285

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00280 and IAI46_00285 are separated by 366 nucleotidesIAI46_00285 and IAI46_00290 are separated by 29 nucleotides IAI46_00280: IAI46_00280 - xylose isomerase, at 64,984 to 66,303 _00280 IAI46_00285: IAI46_00285 - D-xylose ABC transporter substrate-binding protein, at 66,670 to 67,665 _00285 IAI46_00290: IAI46_00290 - xylose ABC transporter ATP-binding protein, at 67,695 to 69,236 _00290 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.723 kb on + strand, within IAI46_00280at 65.724 kb on - strand, within IAI46_00280at 65.724 kb on - strand, within IAI46_00280at 65.750 kb on + strand, within IAI46_00280at 65.795 kb on - strand, within IAI46_00280at 65.795 kb on - strand, within IAI46_00280at 65.960 kb on + strand, within IAI46_00280at 65.960 kb on + strand, within IAI46_00280at 65.960 kb on + strand, within IAI46_00280at 65.995 kb on + strand, within IAI46_00280at 65.995 kb on + strand, within IAI46_00280at 65.996 kb on - strand, within IAI46_00280at 65.996 kb on - strand, within IAI46_00280at 65.996 kb on - strand, within IAI46_00280at 66.011 kb on + strand, within IAI46_00280at 66.011 kb on + strand, within IAI46_00280at 66.011 kb on + strand, within IAI46_00280at 66.012 kb on - strand, within IAI46_00280at 66.012 kb on - strand, within IAI46_00280at 66.012 kb on - strand, within IAI46_00280at 66.012 kb on - strand, within IAI46_00280at 66.012 kb on - strand, within IAI46_00280at 66.014 kb on + strand, within IAI46_00280at 66.014 kb on + strand, within IAI46_00280at 66.015 kb on - strand, within IAI46_00280at 66.015 kb on - strand, within IAI46_00280at 66.153 kb on + strand, within IAI46_00280at 66.153 kb on + strand, within IAI46_00280at 66.153 kb on + strand, within IAI46_00280at 66.154 kb on - strand, within IAI46_00280at 66.154 kb on - strand, within IAI46_00280at 66.162 kb on - strand, within IAI46_00280at 66.224 kb on + strandat 66.225 kb on - strandat 66.225 kb on - strandat 66.225 kb on - strandat 66.267 kb on - strandat 66.293 kb on + strandat 66.305 kb on - strandat 66.334 kb on - strandat 66.346 kb on + strandat 66.346 kb on + strandat 66.346 kb on + strandat 66.377 kb on + strandat 66.377 kb on + strandat 66.378 kb on - strandat 66.382 kb on + strandat 66.407 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.533 kb on + strandat 66.533 kb on + strandat 66.534 kb on - strandat 66.569 kb on - strandat 66.580 kb on + strandat 66.581 kb on - strandat 66.582 kb on + strandat 66.586 kb on + strandat 66.587 kb on - strandat 66.587 kb on - strandat 66.633 kb on + strandat 66.663 kb on - strandat 66.666 kb on + strandat 66.667 kb on - strandat 66.804 kb on + strand, within IAI46_00285at 66.897 kb on + strand, within IAI46_00285at 66.898 kb on - strand, within IAI46_00285at 66.930 kb on + strand, within IAI46_00285at 66.937 kb on + strand, within IAI46_00285at 66.938 kb on - strand, within IAI46_00285at 66.938 kb on - strand, within IAI46_00285at 66.939 kb on + strand, within IAI46_00285at 66.990 kb on + strand, within IAI46_00285at 66.991 kb on - strand, within IAI46_00285at 66.991 kb on - strand, within IAI46_00285at 67.003 kb on + strand, within IAI46_00285at 67.004 kb on - strand, within IAI46_00285at 67.004 kb on - strand, within IAI46_00285at 67.040 kb on - strand, within IAI46_00285at 67.040 kb on - strand, within IAI46_00285at 67.054 kb on - strand, within IAI46_00285at 67.114 kb on + strand, within IAI46_00285at 67.115 kb on - strand, within IAI46_00285at 67.264 kb on - strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.296 kb on + strand, within IAI46_00285at 67.297 kb on - strand, within IAI46_00285at 67.324 kb on - strand, within IAI46_00285at 67.429 kb on - strand, within IAI46_00285at 67.429 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.460 kb on - strand, within IAI46_00285at 67.461 kb on + strand, within IAI46_00285at 67.462 kb on - strand, within IAI46_00285at 67.462 kb on - strand, within IAI46_00285at 67.547 kb on + strand, within IAI46_00285at 67.547 kb on + strand, within IAI46_00285at 67.547 kb on + strand, within IAI46_00285at 67.548 kb on - strand, within IAI46_00285at 67.580 kb on + strandat 67.602 kb on + strandat 67.623 kb on + strandat 67.624 kb on - strandat 67.624 kb on - strandat 67.624 kb on - strandat 67.627 kb on - strandat 67.627 kb on - strandat 67.694 kb on - strandat 67.706 kb on - strandat 67.745 kb on + strandat 67.757 kb on + strandat 67.790 kb on - strandat 67.790 kb on - strandat 67.790 kb on - strandat 67.792 kb on + strandat 67.854 kb on + strand, within IAI46_00290at 67.854 kb on + strand, within IAI46_00290at 67.870 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.885 kb on - strand, within IAI46_00290at 67.901 kb on - strand, within IAI46_00290at 67.940 kb on + strand, within IAI46_00290at 67.940 kb on + strand, within IAI46_00290at 68.040 kb on + strand, within IAI46_00290at 68.041 kb on - strand, within IAI46_00290at 68.053 kb on - strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.069 kb on + strand, within IAI46_00290at 68.070 kb on - strand, within IAI46_00290at 68.070 kb on - strand, within IAI46_00290at 68.105 kb on + strand, within IAI46_00290at 68.189 kb on - strand, within IAI46_00290at 68.189 kb on - strand, within IAI46_00290at 68.201 kb on + strand, within IAI46_00290at 68.201 kb on + strand, within IAI46_00290at 68.279 kb on + strand, within IAI46_00290at 68.279 kb on + strand, within IAI46_00290at 68.283 kb on + strand, within IAI46_00290at 68.284 kb on - strand, within IAI46_00290at 68.284 kb on - strand, within IAI46_00290at 68.284 kb on - strand, within IAI46_00290at 68.434 kb on - strand, within IAI46_00290at 68.434 kb on - strand, within IAI46_00290at 68.455 kb on + strand, within IAI46_00290at 68.455 kb on + strand, within IAI46_00290at 68.455 kb on + strand, within IAI46_00290at 68.456 kb on - strand, within IAI46_00290at 68.456 kb on - strand, within IAI46_00290at 68.456 kb on - strand, within IAI46_00290at 68.560 kb on + strand, within IAI46_00290at 68.625 kb on + strand, within IAI46_00290at 68.651 kb on + strand, within IAI46_00290at 68.651 kb on + strand, within IAI46_00290

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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65,723 + IAI46_00280 0.56 +0.5
65,724 - IAI46_00280 0.56 +0.1
65,724 - IAI46_00280 0.56 -0.4
65,750 + IAI46_00280 0.58 -1.0
65,795 - IAI46_00280 0.61 -1.3
65,795 - IAI46_00280 0.61 +0.1
65,960 + IAI46_00280 0.74 -1.4
65,960 + IAI46_00280 0.74 +0.5
65,960 + IAI46_00280 0.74 +0.2
65,995 + IAI46_00280 0.77 +0.8
65,995 + IAI46_00280 0.77 +0.2
65,996 - IAI46_00280 0.77 +0.7
65,996 - IAI46_00280 0.77 +1.1
65,996 - IAI46_00280 0.77 -1.1
66,011 + IAI46_00280 0.78 +0.1
66,011 + IAI46_00280 0.78 -1.2
66,011 + IAI46_00280 0.78 +1.1
66,012 - IAI46_00280 0.78 +0.5
66,012 - IAI46_00280 0.78 +0.1
66,012 - IAI46_00280 0.78 -0.5
66,012 - IAI46_00280 0.78 +0.3
66,012 - IAI46_00280 0.78 +0.1
66,014 + IAI46_00280 0.78 -1.3
66,014 + IAI46_00280 0.78 +0.3
66,015 - IAI46_00280 0.78 +0.1
66,015 - IAI46_00280 0.78 -1.2
66,153 + IAI46_00280 0.89 -0.3
66,153 + IAI46_00280 0.89 -0.3
66,153 + IAI46_00280 0.89 -0.0
66,154 - IAI46_00280 0.89 +0.3
66,154 - IAI46_00280 0.89 +0.5
66,162 - IAI46_00280 0.89 +0.5
66,224 + +0.3
66,225 - +0.1
66,225 - -0.7
66,225 - -0.4
66,267 - +1.7
66,293 + +0.3
66,305 - -1.5
66,334 - -0.5
66,346 + +1.7
66,346 + +0.7
66,346 + +0.6
66,377 + +0.3
66,377 + -0.9
66,378 - +1.0
66,382 + +0.3
66,407 + +1.3
66,452 + -0.1
66,452 + +0.4
66,452 + -0.3
66,452 + +0.6
66,533 + -0.4
66,533 + -0.2
66,534 - -0.5
66,569 - +0.9
66,580 + -0.1
66,581 - -0.0
66,582 + +0.8
66,586 + +0.6
66,587 - -0.2
66,587 - +1.4
66,633 + +0.2
66,663 - -0.7
66,666 + +1.2
66,667 - +0.4
66,804 + IAI46_00285 0.13 +0.4
66,897 + IAI46_00285 0.23 +0.8
66,898 - IAI46_00285 0.23 +1.0
66,930 + IAI46_00285 0.26 +0.7
66,937 + IAI46_00285 0.27 +0.2
66,938 - IAI46_00285 0.27 -1.3
66,938 - IAI46_00285 0.27 -1.6
66,939 + IAI46_00285 0.27 -0.6
66,990 + IAI46_00285 0.32 -0.1
66,991 - IAI46_00285 0.32 -0.1
66,991 - IAI46_00285 0.32 +0.1
67,003 + IAI46_00285 0.33 -0.1
67,004 - IAI46_00285 0.34 +0.9
67,004 - IAI46_00285 0.34 +0.2
67,040 - IAI46_00285 0.37 -0.8
67,040 - IAI46_00285 0.37 +0.4
67,054 - IAI46_00285 0.39 +2.3
67,114 + IAI46_00285 0.45 +0.3
67,115 - IAI46_00285 0.45 +0.2
67,264 - IAI46_00285 0.60 +0.4
67,296 + IAI46_00285 0.63 -0.4
67,296 + IAI46_00285 0.63 +1.1
67,296 + IAI46_00285 0.63 -0.6
67,296 + IAI46_00285 0.63 +0.1
67,296 + IAI46_00285 0.63 -0.0
67,297 - IAI46_00285 0.63 -0.2
67,324 - IAI46_00285 0.66 -1.0
67,429 - IAI46_00285 0.76 -0.2
67,429 - IAI46_00285 0.76 -0.3
67,460 - IAI46_00285 0.79 +2.4
67,460 - IAI46_00285 0.79 +1.4
67,460 - IAI46_00285 0.79 -1.2
67,460 - IAI46_00285 0.79 +1.9
67,460 - IAI46_00285 0.79 -0.8
67,461 + IAI46_00285 0.79 +0.3
67,462 - IAI46_00285 0.80 -0.6
67,462 - IAI46_00285 0.80 +2.3
67,547 + IAI46_00285 0.88 +1.3
67,547 + IAI46_00285 0.88 -0.3
67,547 + IAI46_00285 0.88 -0.4
67,548 - IAI46_00285 0.88 +0.3
67,580 + +0.2
67,602 + -1.2
67,623 + +1.5
67,624 - +0.1
67,624 - +0.4
67,624 - +0.2
67,627 - -1.1
67,627 - +0.5
67,694 - -0.8
67,706 - +1.7
67,745 + -0.1
67,757 + +0.0
67,790 - -0.2
67,790 - -0.1
67,790 - +0.9
67,792 + -2.0
67,854 + IAI46_00290 0.10 -0.1
67,854 + IAI46_00290 0.10 +0.1
67,870 - IAI46_00290 0.11 +0.1
67,885 - IAI46_00290 0.12 +0.4
67,885 - IAI46_00290 0.12 -1.0
67,885 - IAI46_00290 0.12 +0.4
67,885 - IAI46_00290 0.12 -0.3
67,901 - IAI46_00290 0.13 +0.3
67,940 + IAI46_00290 0.16 -0.7
67,940 + IAI46_00290 0.16 +0.5
68,040 + IAI46_00290 0.22 +0.2
68,041 - IAI46_00290 0.22 -0.7
68,053 - IAI46_00290 0.23 -0.2
68,069 + IAI46_00290 0.24 -0.9
68,069 + IAI46_00290 0.24 +0.9
68,069 + IAI46_00290 0.24 +1.2
68,069 + IAI46_00290 0.24 +0.5
68,069 + IAI46_00290 0.24 -0.2
68,069 + IAI46_00290 0.24 +0.1
68,070 - IAI46_00290 0.24 +0.4
68,070 - IAI46_00290 0.24 +0.2
68,105 + IAI46_00290 0.27 -0.2
68,189 - IAI46_00290 0.32 +0.5
68,189 - IAI46_00290 0.32 -0.4
68,201 + IAI46_00290 0.33 -0.0
68,201 + IAI46_00290 0.33 +0.2
68,279 + IAI46_00290 0.38 -0.5
68,279 + IAI46_00290 0.38 +0.3
68,283 + IAI46_00290 0.38 +0.9
68,284 - IAI46_00290 0.38 +0.2
68,284 - IAI46_00290 0.38 +1.2
68,284 - IAI46_00290 0.38 -0.5
68,434 - IAI46_00290 0.48 +0.1
68,434 - IAI46_00290 0.48 -0.3
68,455 + IAI46_00290 0.49 +0.6
68,455 + IAI46_00290 0.49 +0.6
68,455 + IAI46_00290 0.49 -0.0
68,456 - IAI46_00290 0.49 -0.3
68,456 - IAI46_00290 0.49 +0.3
68,456 - IAI46_00290 0.49 -0.0
68,560 + IAI46_00290 0.56 +0.1
68,625 + IAI46_00290 0.60 +0.5
68,651 + IAI46_00290 0.62 -0.3
68,651 + IAI46_00290 0.62 +0.2

Or see this region's nucleotide sequence