Strain Fitness in Serratia liquefaciens MT49 around IAI46_00175

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00165 and IAI46_00170 overlap by 4 nucleotidesIAI46_00170 and IAI46_00175 are separated by 140 nucleotidesIAI46_00175 and IAI46_00180 are separated by 71 nucleotidesIAI46_00180 and IAI46_00185 are separated by 32 nucleotides IAI46_00165: IAI46_00165 - MltR family transcriptional regulator, at 38,443 to 38,994 _00165 IAI46_00170: IAI46_00170 - LysE family translocator, at 38,991 to 39,599 _00170 IAI46_00175: IAI46_00175 - PLP-dependent aminotransferase family protein, at 39,740 to 41,206 _00175 IAI46_00180: IAI46_00180 - YibL family ribosome-associated protein, at 41,278 to 41,640 _00180 IAI46_00185: IAI46_00185 - class I SAM-dependent methyltransferase, at 41,673 to 42,452 _00185 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.758 kb on + strand, within IAI46_00165at 38.759 kb on - strand, within IAI46_00165at 38.913 kb on + strand, within IAI46_00165at 38.913 kb on + strand, within IAI46_00165at 38.913 kb on + strand, within IAI46_00165at 38.914 kb on - strand, within IAI46_00165at 39.162 kb on - strand, within IAI46_00170at 39.185 kb on + strand, within IAI46_00170at 39.185 kb on + strand, within IAI46_00170at 39.185 kb on + strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.288 kb on + strand, within IAI46_00170at 39.288 kb on + strand, within IAI46_00170at 39.289 kb on - strand, within IAI46_00170at 39.351 kb on + strand, within IAI46_00170at 39.358 kb on - strand, within IAI46_00170at 39.364 kb on + strand, within IAI46_00170at 39.364 kb on + strand, within IAI46_00170at 39.364 kb on + strand, within IAI46_00170at 39.364 kb on + strand, within IAI46_00170at 39.364 kb on + strand, within IAI46_00170at 39.365 kb on - strand, within IAI46_00170at 39.365 kb on - strand, within IAI46_00170at 39.574 kb on + strandat 39.574 kb on + strandat 39.574 kb on + strandat 39.574 kb on + strandat 39.574 kb on + strandat 39.574 kb on + strandat 39.574 kb on + strandat 39.575 kb on - strandat 39.575 kb on - strandat 39.581 kb on + strandat 39.582 kb on - strandat 39.600 kb on - strandat 39.600 kb on - strandat 39.641 kb on + strandat 39.642 kb on - strandat 39.702 kb on - strandat 39.707 kb on + strandat 39.707 kb on + strandat 39.710 kb on + strandat 39.717 kb on + strandat 39.817 kb on + strandat 39.818 kb on - strandat 39.818 kb on - strandat 39.886 kb on + strandat 39.930 kb on + strand, within IAI46_00175at 39.931 kb on - strand, within IAI46_00175at 39.956 kb on + strand, within IAI46_00175at 39.956 kb on + strand, within IAI46_00175at 39.956 kb on + strand, within IAI46_00175at 39.957 kb on - strand, within IAI46_00175at 39.957 kb on - strand, within IAI46_00175at 40.348 kb on + strand, within IAI46_00175at 40.377 kb on - strand, within IAI46_00175at 40.534 kb on + strand, within IAI46_00175at 40.534 kb on + strand, within IAI46_00175at 40.534 kb on + strand, within IAI46_00175at 40.534 kb on + strand, within IAI46_00175at 40.535 kb on - strand, within IAI46_00175at 40.535 kb on - strand, within IAI46_00175at 40.535 kb on - strand, within IAI46_00175at 40.535 kb on - strand, within IAI46_00175at 40.613 kb on + strand, within IAI46_00175at 40.699 kb on + strand, within IAI46_00175at 40.700 kb on - strand, within IAI46_00175at 40.880 kb on + strand, within IAI46_00175at 40.881 kb on - strand, within IAI46_00175at 41.004 kb on + strand, within IAI46_00175at 41.060 kb on + strandat 41.061 kb on - strandat 41.061 kb on - strandat 41.061 kb on - strandat 41.061 kb on - strandat 41.061 kb on - strandat 41.083 kb on + strandat 41.084 kb on - strandat 41.084 kb on - strandat 41.084 kb on - strandat 41.116 kb on + strandat 41.126 kb on + strandat 41.127 kb on - strandat 41.225 kb on - strandat 41.245 kb on + strandat 41.289 kb on - strandat 41.304 kb on + strandat 41.304 kb on + strandat 41.304 kb on + strandat 41.304 kb on + strandat 41.305 kb on - strandat 41.305 kb on - strandat 41.441 kb on + strand, within IAI46_00180at 41.441 kb on + strand, within IAI46_00180at 41.442 kb on - strand, within IAI46_00180at 41.442 kb on - strand, within IAI46_00180at 41.442 kb on - strand, within IAI46_00180at 41.442 kb on - strand, within IAI46_00180at 41.442 kb on - strand, within IAI46_00180at 41.442 kb on - strand, within IAI46_00180at 41.564 kb on + strand, within IAI46_00180at 41.564 kb on + strand, within IAI46_00180at 41.564 kb on + strand, within IAI46_00180at 41.564 kb on + strand, within IAI46_00180at 41.565 kb on - strand, within IAI46_00180at 41.692 kb on + strandat 41.692 kb on + strandat 41.692 kb on + strandat 41.692 kb on + strandat 41.692 kb on + strandat 41.693 kb on - strandat 41.813 kb on + strand, within IAI46_00185at 41.837 kb on + strand, within IAI46_00185at 41.840 kb on - strand, within IAI46_00185at 41.876 kb on + strand, within IAI46_00185at 41.876 kb on + strand, within IAI46_00185at 41.876 kb on + strand, within IAI46_00185at 41.876 kb on + strand, within IAI46_00185at 41.877 kb on - strand, within IAI46_00185at 41.877 kb on - strand, within IAI46_00185at 41.877 kb on - strand, within IAI46_00185at 41.877 kb on - strand, within IAI46_00185at 41.877 kb on - strand, within IAI46_00185at 41.880 kb on + strand, within IAI46_00185at 41.880 kb on + strand, within IAI46_00185at 41.881 kb on - strand, within IAI46_00185at 41.881 kb on - strand, within IAI46_00185at 41.881 kb on - strand, within IAI46_00185at 41.881 kb on - strand, within IAI46_00185at 41.881 kb on - strand, within IAI46_00185at 41.941 kb on + strand, within IAI46_00185at 41.941 kb on + strand, within IAI46_00185at 41.991 kb on - strand, within IAI46_00185at 42.004 kb on - strand, within IAI46_00185at 42.020 kb on + strand, within IAI46_00185at 42.020 kb on + strand, within IAI46_00185at 42.020 kb on + strand, within IAI46_00185at 42.021 kb on - strand, within IAI46_00185

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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38,758 + IAI46_00165 0.57 +0.7
38,759 - IAI46_00165 0.57 +0.8
38,913 + IAI46_00165 0.85 -0.9
38,913 + IAI46_00165 0.85 +0.4
38,913 + IAI46_00165 0.85 -0.5
38,914 - IAI46_00165 0.85 +1.4
39,162 - IAI46_00170 0.28 +0.4
39,185 + IAI46_00170 0.32 +0.1
39,185 + IAI46_00170 0.32 +0.7
39,185 + IAI46_00170 0.32 -0.0
39,186 - IAI46_00170 0.32 +1.8
39,186 - IAI46_00170 0.32 -0.1
39,186 - IAI46_00170 0.32 +0.1
39,186 - IAI46_00170 0.32 -0.3
39,288 + IAI46_00170 0.49 +0.0
39,288 + IAI46_00170 0.49 +0.1
39,289 - IAI46_00170 0.49 -0.6
39,351 + IAI46_00170 0.59 -0.8
39,358 - IAI46_00170 0.60 -0.9
39,364 + IAI46_00170 0.61 +0.9
39,364 + IAI46_00170 0.61 +0.4
39,364 + IAI46_00170 0.61 -0.1
39,364 + IAI46_00170 0.61 -0.9
39,364 + IAI46_00170 0.61 -0.4
39,365 - IAI46_00170 0.61 +0.5
39,365 - IAI46_00170 0.61 -0.3
39,574 + +1.0
39,574 + +0.4
39,574 + -0.7
39,574 + +2.8
39,574 + +0.8
39,574 + -0.7
39,574 + +0.0
39,575 - -0.7
39,575 - -1.5
39,581 + -1.2
39,582 - +0.3
39,600 - +0.0
39,600 - -0.1
39,641 + -0.4
39,642 - +0.3
39,702 - -0.1
39,707 + +0.1
39,707 + -0.0
39,710 + +0.3
39,717 + +0.5
39,817 + +0.4
39,818 - -0.4
39,818 - +1.5
39,886 + +2.5
39,930 + IAI46_00175 0.13 +0.4
39,931 - IAI46_00175 0.13 -0.1
39,956 + IAI46_00175 0.15 +0.5
39,956 + IAI46_00175 0.15 -0.1
39,956 + IAI46_00175 0.15 +0.1
39,957 - IAI46_00175 0.15 -0.9
39,957 - IAI46_00175 0.15 -0.9
40,348 + IAI46_00175 0.41 -0.1
40,377 - IAI46_00175 0.43 +0.1
40,534 + IAI46_00175 0.54 +0.5
40,534 + IAI46_00175 0.54 -1.2
40,534 + IAI46_00175 0.54 -0.1
40,534 + IAI46_00175 0.54 +0.3
40,535 - IAI46_00175 0.54 +0.8
40,535 - IAI46_00175 0.54 -0.1
40,535 - IAI46_00175 0.54 +0.2
40,535 - IAI46_00175 0.54 +0.3
40,613 + IAI46_00175 0.60 +0.9
40,699 + IAI46_00175 0.65 -0.2
40,700 - IAI46_00175 0.65 -0.3
40,880 + IAI46_00175 0.78 +1.5
40,881 - IAI46_00175 0.78 +1.6
41,004 + IAI46_00175 0.86 -0.3
41,060 + +0.2
41,061 - +1.5
41,061 - -0.2
41,061 - -0.4
41,061 - +0.5
41,061 - +0.4
41,083 + -0.3
41,084 - -0.1
41,084 - -0.6
41,084 - +0.8
41,116 + +0.8
41,126 + -0.2
41,127 - -0.0
41,225 - +1.1
41,245 + +0.1
41,289 - +0.2
41,304 + +0.0
41,304 + +0.6
41,304 + -0.0
41,304 + -0.2
41,305 - +0.0
41,305 - +0.2
41,441 + IAI46_00180 0.45 +0.1
41,441 + IAI46_00180 0.45 +0.0
41,442 - IAI46_00180 0.45 +0.3
41,442 - IAI46_00180 0.45 +0.4
41,442 - IAI46_00180 0.45 -0.5
41,442 - IAI46_00180 0.45 +0.6
41,442 - IAI46_00180 0.45 +0.2
41,442 - IAI46_00180 0.45 -0.1
41,564 + IAI46_00180 0.79 -0.8
41,564 + IAI46_00180 0.79 -0.4
41,564 + IAI46_00180 0.79 +0.2
41,564 + IAI46_00180 0.79 -0.0
41,565 - IAI46_00180 0.79 +0.7
41,692 + +0.0
41,692 + +1.0
41,692 + -0.3
41,692 + -0.4
41,692 + +0.9
41,693 - +0.6
41,813 + IAI46_00185 0.18 +0.3
41,837 + IAI46_00185 0.21 +0.5
41,840 - IAI46_00185 0.21 -0.2
41,876 + IAI46_00185 0.26 -0.9
41,876 + IAI46_00185 0.26 +0.7
41,876 + IAI46_00185 0.26 -0.1
41,876 + IAI46_00185 0.26 +0.5
41,877 - IAI46_00185 0.26 -0.4
41,877 - IAI46_00185 0.26 -0.0
41,877 - IAI46_00185 0.26 -0.5
41,877 - IAI46_00185 0.26 -0.5
41,877 - IAI46_00185 0.26 -0.5
41,880 + IAI46_00185 0.27 +0.5
41,880 + IAI46_00185 0.27 -0.3
41,881 - IAI46_00185 0.27 -0.3
41,881 - IAI46_00185 0.27 +0.1
41,881 - IAI46_00185 0.27 +0.6
41,881 - IAI46_00185 0.27 +0.4
41,881 - IAI46_00185 0.27 -0.6
41,941 + IAI46_00185 0.34 +0.9
41,941 + IAI46_00185 0.34 +0.2
41,991 - IAI46_00185 0.41 -2.5
42,004 - IAI46_00185 0.42 -0.5
42,020 + IAI46_00185 0.44 +0.2
42,020 + IAI46_00185 0.44 -0.1
42,020 + IAI46_00185 0.44 +0.3
42,021 - IAI46_00185 0.45 +0.7

Or see this region's nucleotide sequence