Experiment: m.b. Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3707 and Echvi_3708 are separated by 52 nucleotides Echvi_3708 and Echvi_3709 are separated by 2 nucleotides Echvi_3709 and Echvi_3710 are separated by 3 nucleotides
Echvi_3707: Echvi_3707 - Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase, at 4,414,392 to 4,415,327
_3707
Echvi_3708: Echvi_3708 - anti-anti-sigma factor, at 4,415,380 to 4,415,763
_3708
Echvi_3709: Echvi_3709 - ribonuclease Z, at 4,415,766 to 4,416,677
_3709
Echvi_3710: Echvi_3710 - conserved hypothetical integral membrane protein, at 4,416,681 to 4,417,481
_3710
Position (kb) 4415
4416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4415.387 kb on - strand at 4415.411 kb on - strand at 4415.414 kb on + strand at 4415.415 kb on - strand at 4415.500 kb on + strand, within Echvi_3708 at 4415.500 kb on + strand, within Echvi_3708 at 4415.536 kb on + strand, within Echvi_3708 at 4415.716 kb on - strand, within Echvi_3708 at 4415.762 kb on - strand at 4415.788 kb on + strand at 4415.788 kb on + strand at 4415.789 kb on - strand at 4415.789 kb on - strand at 4415.936 kb on + strand, within Echvi_3709 at 4415.937 kb on - strand, within Echvi_3709 at 4415.942 kb on + strand, within Echvi_3709 at 4415.953 kb on + strand, within Echvi_3709 at 4415.953 kb on + strand, within Echvi_3709 at 4415.954 kb on - strand, within Echvi_3709 at 4415.967 kb on + strand, within Echvi_3709 at 4416.078 kb on + strand, within Echvi_3709 at 4416.079 kb on - strand, within Echvi_3709 at 4416.086 kb on + strand, within Echvi_3709 at 4416.170 kb on - strand, within Echvi_3709 at 4416.170 kb on - strand, within Echvi_3709 at 4416.171 kb on + strand, within Echvi_3709 at 4416.242 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.317 kb on + strand, within Echvi_3709 at 4416.338 kb on - strand, within Echvi_3709 at 4416.505 kb on - strand, within Echvi_3709 at 4416.576 kb on + strand, within Echvi_3709 at 4416.589 kb on - strand at 4416.666 kb on + strand at 4416.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.1 mg/ml remove 4,415,387 - -1.0 4,415,411 - -0.5 4,415,414 + +0.7 4,415,415 - -0.2 4,415,500 + Echvi_3708 0.31 -1.4 4,415,500 + Echvi_3708 0.31 -1.4 4,415,536 + Echvi_3708 0.41 -2.7 4,415,716 - Echvi_3708 0.88 -1.0 4,415,762 - -0.3 4,415,788 + +0.4 4,415,788 + +0.9 4,415,789 - -1.1 4,415,789 - +1.9 4,415,936 + Echvi_3709 0.19 -0.0 4,415,937 - Echvi_3709 0.19 -0.8 4,415,942 + Echvi_3709 0.19 -1.0 4,415,953 + Echvi_3709 0.21 -1.0 4,415,953 + Echvi_3709 0.21 -0.1 4,415,954 - Echvi_3709 0.21 +0.9 4,415,967 + Echvi_3709 0.22 +0.1 4,416,078 + Echvi_3709 0.34 +0.2 4,416,079 - Echvi_3709 0.34 -1.3 4,416,086 + Echvi_3709 0.35 -0.0 4,416,170 - Echvi_3709 0.44 -1.6 4,416,170 - Echvi_3709 0.44 +0.5 4,416,171 + Echvi_3709 0.44 -0.6 4,416,242 + Echvi_3709 0.52 +0.4 4,416,315 + Echvi_3709 0.60 -0.3 4,416,315 + Echvi_3709 0.60 -1.9 4,416,315 + Echvi_3709 0.60 -0.4 4,416,315 + Echvi_3709 0.60 -0.2 4,416,317 + Echvi_3709 0.60 +0.7 4,416,338 - Echvi_3709 0.63 -3.1 4,416,505 - Echvi_3709 0.81 -0.3 4,416,576 + Echvi_3709 0.89 -0.1 4,416,589 - +1.3 4,416,666 + +0.5 4,416,667 - +0.5
Or see this region's nucleotide sequence