Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0848

Experiment: m.b. Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0847 and Echvi_0848 are separated by 251 nucleotidesEchvi_0848 and Echvi_0849 are separated by 3 nucleotidesEchvi_0849 and Echvi_0850 overlap by 1 nucleotidesEchvi_0850 and Echvi_0851 are separated by 12 nucleotides Echvi_0847: Echvi_0847 - Predicted dinucleotide-binding enzymes, at 970,296 to 970,910 _0847 Echvi_0848: Echvi_0848 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 971,162 to 971,950 _0848 Echvi_0849: Echvi_0849 - probable S-adenosylmethionine-dependent methyltransferase, YraL family, at 971,954 to 972,640 _0849 Echvi_0850: Echvi_0850 - Pterin-4a-carbinolamine dehydratase, at 972,640 to 972,870 _0850 Echvi_0851: Echvi_0851 - Uncharacterized conserved protein, at 972,883 to 973,152 _0851 Position (kb) 971 972Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 970.180 kb on - strandat 970.198 kb on + strandat 970.199 kb on - strandat 970.200 kb on + strandat 970.200 kb on + strandat 970.200 kb on + strandat 970.201 kb on - strandat 970.321 kb on + strandat 970.321 kb on + strandat 970.369 kb on + strand, within Echvi_0847at 970.369 kb on + strand, within Echvi_0847at 970.380 kb on + strand, within Echvi_0847at 970.545 kb on - strand, within Echvi_0847at 970.555 kb on - strand, within Echvi_0847at 970.558 kb on - strand, within Echvi_0847at 970.565 kb on + strand, within Echvi_0847at 970.565 kb on + strand, within Echvi_0847at 970.566 kb on - strand, within Echvi_0847at 970.588 kb on + strand, within Echvi_0847at 970.588 kb on + strand, within Echvi_0847at 970.599 kb on - strand, within Echvi_0847at 970.616 kb on + strand, within Echvi_0847at 970.618 kb on + strand, within Echvi_0847at 970.618 kb on + strand, within Echvi_0847at 970.619 kb on - strand, within Echvi_0847at 970.641 kb on + strand, within Echvi_0847at 970.641 kb on + strand, within Echvi_0847at 970.645 kb on - strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.649 kb on + strand, within Echvi_0847at 970.679 kb on + strand, within Echvi_0847at 970.679 kb on + strand, within Echvi_0847at 970.683 kb on + strand, within Echvi_0847at 970.684 kb on - strand, within Echvi_0847at 970.684 kb on - strand, within Echvi_0847at 970.684 kb on - strand, within Echvi_0847at 970.718 kb on + strand, within Echvi_0847at 970.759 kb on - strand, within Echvi_0847at 970.759 kb on - strand, within Echvi_0847at 970.763 kb on + strand, within Echvi_0847at 970.764 kb on - strand, within Echvi_0847at 970.795 kb on - strand, within Echvi_0847at 970.795 kb on - strand, within Echvi_0847at 970.795 kb on - strand, within Echvi_0847at 970.821 kb on + strand, within Echvi_0847at 970.839 kb on + strand, within Echvi_0847at 970.854 kb on - strandat 970.854 kb on - strandat 970.855 kb on + strandat 970.855 kb on + strandat 970.855 kb on + strandat 970.856 kb on - strandat 970.856 kb on - strandat 970.902 kb on + strandat 970.915 kb on - strandat 970.925 kb on + strandat 970.926 kb on - strandat 970.930 kb on + strandat 971.057 kb on + strandat 971.057 kb on + strandat 971.057 kb on + strandat 971.078 kb on + strandat 971.148 kb on - strandat 971.149 kb on + strandat 971.150 kb on - strandat 971.241 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.316 kb on + strand, within Echvi_0848at 971.367 kb on + strand, within Echvi_0848at 971.368 kb on - strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.441 kb on + strand, within Echvi_0848at 971.445 kb on + strand, within Echvi_0848at 971.446 kb on - strand, within Echvi_0848at 971.472 kb on + strand, within Echvi_0848at 971.493 kb on - strand, within Echvi_0848at 971.493 kb on - strand, within Echvi_0848at 971.523 kb on - strand, within Echvi_0848at 971.543 kb on - strand, within Echvi_0848at 971.543 kb on - strand, within Echvi_0848at 971.584 kb on + strand, within Echvi_0848at 971.584 kb on + strand, within Echvi_0848at 971.587 kb on + strand, within Echvi_0848at 971.588 kb on - strand, within Echvi_0848at 971.598 kb on + strand, within Echvi_0848at 971.599 kb on - strand, within Echvi_0848at 971.599 kb on - strand, within Echvi_0848at 971.699 kb on + strand, within Echvi_0848at 971.700 kb on - strand, within Echvi_0848at 971.700 kb on - strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.710 kb on + strand, within Echvi_0848at 971.712 kb on + strand, within Echvi_0848at 971.712 kb on + strand, within Echvi_0848at 971.752 kb on + strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.821 kb on - strand, within Echvi_0848at 971.852 kb on + strand, within Echvi_0848at 971.857 kb on + strand, within Echvi_0848at 971.931 kb on - strandat 971.956 kb on - strandat 971.975 kb on - strandat 971.979 kb on - strandat 971.998 kb on + strandat 971.999 kb on - strandat 971.999 kb on - strandat 972.007 kb on + strandat 972.008 kb on - strandat 972.009 kb on + strandat 972.009 kb on + strandat 972.009 kb on + strandat 972.009 kb on + strandat 972.012 kb on + strandat 972.012 kb on + strandat 972.054 kb on + strand, within Echvi_0849at 972.338 kb on + strand, within Echvi_0849at 972.344 kb on + strand, within Echvi_0849at 972.434 kb on + strand, within Echvi_0849at 972.457 kb on + strand, within Echvi_0849at 972.457 kb on + strand, within Echvi_0849at 972.462 kb on + strand, within Echvi_0849at 972.463 kb on - strand, within Echvi_0849at 972.560 kb on + strand, within Echvi_0849at 972.560 kb on + strand, within Echvi_0849at 972.574 kb on + strandat 972.577 kb on + strandat 972.641 kb on + strandat 972.641 kb on + strandat 972.642 kb on - strandat 972.642 kb on - strandat 972.693 kb on + strand, within Echvi_0850at 972.835 kb on + strand, within Echvi_0850at 972.843 kb on + strand, within Echvi_0850at 972.844 kb on - strand, within Echvi_0850at 972.844 kb on - strand, within Echvi_0850at 972.923 kb on + strand, within Echvi_0851at 972.924 kb on - strand, within Echvi_0851at 972.925 kb on + strand, within Echvi_0851at 972.925 kb on + strand, within Echvi_0851at 972.926 kb on - strand, within Echvi_0851at 972.926 kb on - strand, within Echvi_0851

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.1 mg/ml
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970,180 - -0.8
970,198 + +0.3
970,199 - +0.2
970,200 + +1.6
970,200 + +0.4
970,200 + +0.5
970,201 - -0.1
970,321 + -0.2
970,321 + +0.3
970,369 + Echvi_0847 0.12 +0.0
970,369 + Echvi_0847 0.12 -0.2
970,380 + Echvi_0847 0.14 -1.2
970,545 - Echvi_0847 0.40 -1.6
970,555 - Echvi_0847 0.42 +1.2
970,558 - Echvi_0847 0.43 +0.9
970,565 + Echvi_0847 0.44 -1.0
970,565 + Echvi_0847 0.44 +0.0
970,566 - Echvi_0847 0.44 +1.1
970,588 + Echvi_0847 0.47 +0.7
970,588 + Echvi_0847 0.47 -1.9
970,599 - Echvi_0847 0.49 +0.9
970,616 + Echvi_0847 0.52 +1.1
970,618 + Echvi_0847 0.52 +0.2
970,618 + Echvi_0847 0.52 -0.3
970,619 - Echvi_0847 0.53 +1.2
970,641 + Echvi_0847 0.56 -0.3
970,641 + Echvi_0847 0.56 +0.2
970,645 - Echvi_0847 0.57 +0.3
970,649 + Echvi_0847 0.57 +1.1
970,649 + Echvi_0847 0.57 -0.2
970,649 + Echvi_0847 0.57 -0.7
970,649 + Echvi_0847 0.57 -0.2
970,679 + Echvi_0847 0.62 +0.3
970,679 + Echvi_0847 0.62 -2.3
970,683 + Echvi_0847 0.63 +0.5
970,684 - Echvi_0847 0.63 +0.5
970,684 - Echvi_0847 0.63 +0.2
970,684 - Echvi_0847 0.63 -0.1
970,718 + Echvi_0847 0.69 -0.8
970,759 - Echvi_0847 0.75 -0.7
970,759 - Echvi_0847 0.75 +1.0
970,763 + Echvi_0847 0.76 +0.1
970,764 - Echvi_0847 0.76 -1.5
970,795 - Echvi_0847 0.81 -1.3
970,795 - Echvi_0847 0.81 -0.2
970,795 - Echvi_0847 0.81 +2.3
970,821 + Echvi_0847 0.85 +0.6
970,839 + Echvi_0847 0.88 -0.7
970,854 - +1.1
970,854 - -1.2
970,855 + +0.7
970,855 + +1.1
970,855 + +0.4
970,856 - +0.1
970,856 - -0.9
970,902 + +0.9
970,915 - +0.2
970,925 + +0.7
970,926 - -1.4
970,930 + +0.2
971,057 + +1.7
971,057 + -1.1
971,057 + +0.3
971,078 + -0.2
971,148 - +0.8
971,149 + -2.5
971,150 - +1.1
971,241 + Echvi_0848 0.10 -0.7
971,316 + Echvi_0848 0.20 -0.3
971,316 + Echvi_0848 0.20 +0.0
971,316 + Echvi_0848 0.20 -0.6
971,367 + Echvi_0848 0.26 -1.5
971,368 - Echvi_0848 0.26 +0.2
971,441 + Echvi_0848 0.35 +0.8
971,441 + Echvi_0848 0.35 -0.5
971,441 + Echvi_0848 0.35 +1.1
971,445 + Echvi_0848 0.36 -0.3
971,446 - Echvi_0848 0.36 +0.6
971,472 + Echvi_0848 0.39 +1.7
971,493 - Echvi_0848 0.42 -0.7
971,493 - Echvi_0848 0.42 +0.2
971,523 - Echvi_0848 0.46 -0.8
971,543 - Echvi_0848 0.48 -1.3
971,543 - Echvi_0848 0.48 +0.5
971,584 + Echvi_0848 0.53 -0.2
971,584 + Echvi_0848 0.53 -0.9
971,587 + Echvi_0848 0.54 +0.9
971,588 - Echvi_0848 0.54 -2.3
971,598 + Echvi_0848 0.55 +1.1
971,599 - Echvi_0848 0.55 +0.9
971,599 - Echvi_0848 0.55 +4.3
971,699 + Echvi_0848 0.68 -0.4
971,700 - Echvi_0848 0.68 -0.7
971,700 - Echvi_0848 0.68 +0.3
971,710 + Echvi_0848 0.69 -0.2
971,710 + Echvi_0848 0.69 -0.3
971,710 + Echvi_0848 0.69 -1.8
971,712 + Echvi_0848 0.70 +1.5
971,712 + Echvi_0848 0.70 +0.4
971,752 + Echvi_0848 0.75 +0.1
971,821 - Echvi_0848 0.84 -0.2
971,821 - Echvi_0848 0.84 -1.8
971,821 - Echvi_0848 0.84 +0.2
971,821 - Echvi_0848 0.84 -2.0
971,852 + Echvi_0848 0.87 +1.9
971,857 + Echvi_0848 0.88 +0.8
971,931 - -0.1
971,956 - +0.6
971,975 - -0.4
971,979 - -0.9
971,998 + -0.8
971,999 - -0.5
971,999 - -2.2
972,007 + +1.6
972,008 - -0.8
972,009 + -0.1
972,009 + -1.2
972,009 + +0.6
972,009 + -1.1
972,012 + +0.3
972,012 + +2.2
972,054 + Echvi_0849 0.15 -0.6
972,338 + Echvi_0849 0.56 -1.5
972,344 + Echvi_0849 0.57 +0.1
972,434 + Echvi_0849 0.70 -0.1
972,457 + Echvi_0849 0.73 +0.6
972,457 + Echvi_0849 0.73 +0.9
972,462 + Echvi_0849 0.74 +0.4
972,463 - Echvi_0849 0.74 -0.1
972,560 + Echvi_0849 0.88 -0.3
972,560 + Echvi_0849 0.88 +0.2
972,574 + -3.4
972,577 + +0.9
972,641 + +0.3
972,641 + +0.3
972,642 - +0.3
972,642 - -0.7
972,693 + Echvi_0850 0.23 +0.0
972,835 + Echvi_0850 0.84 -0.6
972,843 + Echvi_0850 0.88 -0.3
972,844 - Echvi_0850 0.88 -1.4
972,844 - Echvi_0850 0.88 +1.5
972,923 + Echvi_0851 0.15 -0.6
972,924 - Echvi_0851 0.15 -1.3
972,925 + Echvi_0851 0.16 +0.6
972,925 + Echvi_0851 0.16 +0.1
972,926 - Echvi_0851 0.16 -0.8
972,926 - Echvi_0851 0.16 -0.4

Or see this region's nucleotide sequence