Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4511 and EX28DRAFT_4512 overlap by 1 nucleotides EX28DRAFT_4512 and EX28DRAFT_4513 are separated by 41 nucleotides EX28DRAFT_4513 and EX28DRAFT_4514 are separated by 10 nucleotides EX28DRAFT_4514 and EX28DRAFT_4515 overlap by 76 nucleotides EX28DRAFT_4515 and EX28DRAFT_4516 are separated by 262 nucleotides
EX28DRAFT_4511: EX28DRAFT_4511 - Xaa-Pro aminopeptidase, at 77,726 to 79,057
_4511
EX28DRAFT_4512: EX28DRAFT_4512 - Uncharacterized conserved protein, at 79,057 to 79,671
_4512
EX28DRAFT_4513: EX28DRAFT_4513 - Trk-type K+ transport systems, membrane components, at 79,713 to 81,164
_4513
EX28DRAFT_4514: EX28DRAFT_4514 - Flavodoxin, at 81,175 to 81,720
_4514
EX28DRAFT_4515: EX28DRAFT_4515 - hypothetical protein, at 81,645 to 81,830
_4515
EX28DRAFT_4516: EX28DRAFT_4516 - 16S, at 82,093 to 82,150
_4516
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 78.818 kb on - strand, within EX28DRAFT_4511 at 78.827 kb on + strand, within EX28DRAFT_4511 at 78.828 kb on - strand, within EX28DRAFT_4511 at 78.828 kb on - strand, within EX28DRAFT_4511 at 78.887 kb on + strand, within EX28DRAFT_4511 at 78.887 kb on + strand, within EX28DRAFT_4511 at 78.888 kb on - strand, within EX28DRAFT_4511 at 78.998 kb on - strand at 78.998 kb on - strand at 79.125 kb on + strand, within EX28DRAFT_4512 at 79.125 kb on + strand, within EX28DRAFT_4512 at 79.152 kb on - strand, within EX28DRAFT_4512 at 79.342 kb on - strand, within EX28DRAFT_4512 at 79.364 kb on - strand, within EX28DRAFT_4512 at 79.446 kb on + strand, within EX28DRAFT_4512 at 79.446 kb on + strand, within EX28DRAFT_4512 at 79.471 kb on + strand, within EX28DRAFT_4512 at 79.471 kb on + strand, within EX28DRAFT_4512 at 79.473 kb on + strand, within EX28DRAFT_4512 at 79.474 kb on - strand, within EX28DRAFT_4512 at 79.575 kb on - strand, within EX28DRAFT_4512 at 79.575 kb on - strand, within EX28DRAFT_4512 at 79.575 kb on - strand, within EX28DRAFT_4512 at 79.800 kb on - strand at 79.976 kb on + strand, within EX28DRAFT_4513 at 79.976 kb on + strand, within EX28DRAFT_4513 at 79.995 kb on - strand, within EX28DRAFT_4513 at 80.227 kb on - strand, within EX28DRAFT_4513 at 80.273 kb on + strand, within EX28DRAFT_4513 at 80.277 kb on + strand, within EX28DRAFT_4513 at 80.277 kb on + strand, within EX28DRAFT_4513 at 80.277 kb on + strand, within EX28DRAFT_4513 at 80.277 kb on + strand, within EX28DRAFT_4513 at 80.277 kb on + strand, within EX28DRAFT_4513 at 80.277 kb on + strand, within EX28DRAFT_4513 at 80.278 kb on - strand, within EX28DRAFT_4513 at 80.278 kb on - strand, within EX28DRAFT_4513 at 80.278 kb on - strand, within EX28DRAFT_4513 at 80.278 kb on - strand, within EX28DRAFT_4513 at 80.278 kb on - strand, within EX28DRAFT_4513 at 80.281 kb on + strand, within EX28DRAFT_4513 at 80.282 kb on - strand, within EX28DRAFT_4513 at 80.282 kb on - strand, within EX28DRAFT_4513 at 80.282 kb on - strand, within EX28DRAFT_4513 at 80.427 kb on - strand, within EX28DRAFT_4513 at 80.466 kb on - strand, within EX28DRAFT_4513 at 80.469 kb on + strand, within EX28DRAFT_4513 at 80.514 kb on + strand, within EX28DRAFT_4513 at 80.558 kb on + strand, within EX28DRAFT_4513 at 80.559 kb on - strand, within EX28DRAFT_4513 at 80.627 kb on - strand, within EX28DRAFT_4513 at 80.650 kb on + strand, within EX28DRAFT_4513 at 80.726 kb on - strand, within EX28DRAFT_4513 at 80.738 kb on + strand, within EX28DRAFT_4513 at 80.787 kb on - strand, within EX28DRAFT_4513 at 80.787 kb on - strand, within EX28DRAFT_4513 at 80.859 kb on - strand, within EX28DRAFT_4513 at 80.859 kb on - strand, within EX28DRAFT_4513 at 80.859 kb on - strand, within EX28DRAFT_4513 at 81.095 kb on + strand at 81.146 kb on + strand at 81.695 kb on + strand at 81.714 kb on + strand at 81.714 kb on + strand at 81.715 kb on - strand at 81.715 kb on - strand at 81.718 kb on + strand at 81.718 kb on + strand at 81.718 kb on + strand at 81.726 kb on - strand, within EX28DRAFT_4515 at 81.785 kb on - strand, within EX28DRAFT_4515 at 81.793 kb on - strand, within EX28DRAFT_4515
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 78,818 - EX28DRAFT_4511 0.82 +0.2 78,827 + EX28DRAFT_4511 0.83 -0.7 78,828 - EX28DRAFT_4511 0.83 +0.3 78,828 - EX28DRAFT_4511 0.83 -0.8 78,887 + EX28DRAFT_4511 0.87 +1.0 78,887 + EX28DRAFT_4511 0.87 +0.1 78,888 - EX28DRAFT_4511 0.87 +0.2 78,998 - +0.5 78,998 - +0.1 79,125 + EX28DRAFT_4512 0.11 -0.2 79,125 + EX28DRAFT_4512 0.11 +0.2 79,152 - EX28DRAFT_4512 0.15 -0.5 79,342 - EX28DRAFT_4512 0.46 +0.5 79,364 - EX28DRAFT_4512 0.50 -0.3 79,446 + EX28DRAFT_4512 0.63 +1.0 79,446 + EX28DRAFT_4512 0.63 -1.5 79,471 + EX28DRAFT_4512 0.67 +0.0 79,471 + EX28DRAFT_4512 0.67 +0.3 79,473 + EX28DRAFT_4512 0.68 -0.5 79,474 - EX28DRAFT_4512 0.68 +0.6 79,575 - EX28DRAFT_4512 0.84 +0.5 79,575 - EX28DRAFT_4512 0.84 +0.1 79,575 - EX28DRAFT_4512 0.84 +0.9 79,800 - -0.6 79,976 + EX28DRAFT_4513 0.18 -1.5 79,976 + EX28DRAFT_4513 0.18 -0.5 79,995 - EX28DRAFT_4513 0.19 -1.6 80,227 - EX28DRAFT_4513 0.35 -1.7 80,273 + EX28DRAFT_4513 0.39 -1.1 80,277 + EX28DRAFT_4513 0.39 +0.1 80,277 + EX28DRAFT_4513 0.39 -0.6 80,277 + EX28DRAFT_4513 0.39 -1.7 80,277 + EX28DRAFT_4513 0.39 +0.2 80,277 + EX28DRAFT_4513 0.39 -1.0 80,277 + EX28DRAFT_4513 0.39 -0.8 80,278 - EX28DRAFT_4513 0.39 +0.0 80,278 - EX28DRAFT_4513 0.39 -0.6 80,278 - EX28DRAFT_4513 0.39 -0.2 80,278 - EX28DRAFT_4513 0.39 -1.9 80,278 - EX28DRAFT_4513 0.39 -0.6 80,281 + EX28DRAFT_4513 0.39 -1.7 80,282 - EX28DRAFT_4513 0.39 -0.5 80,282 - EX28DRAFT_4513 0.39 -0.4 80,282 - EX28DRAFT_4513 0.39 -2.5 80,427 - EX28DRAFT_4513 0.49 -0.2 80,466 - EX28DRAFT_4513 0.52 -0.6 80,469 + EX28DRAFT_4513 0.52 -0.2 80,514 + EX28DRAFT_4513 0.55 -0.1 80,558 + EX28DRAFT_4513 0.58 +0.9 80,559 - EX28DRAFT_4513 0.58 -1.0 80,627 - EX28DRAFT_4513 0.63 -1.0 80,650 + EX28DRAFT_4513 0.65 +1.2 80,726 - EX28DRAFT_4513 0.70 -0.6 80,738 + EX28DRAFT_4513 0.71 -0.9 80,787 - EX28DRAFT_4513 0.74 -0.2 80,787 - EX28DRAFT_4513 0.74 +0.2 80,859 - EX28DRAFT_4513 0.79 -0.7 80,859 - EX28DRAFT_4513 0.79 -0.2 80,859 - EX28DRAFT_4513 0.79 -0.9 81,095 + -1.7 81,146 + -1.0 81,695 + -0.0 81,714 + +0.5 81,714 + +0.5 81,715 - -0.3 81,715 - -0.5 81,718 + -0.2 81,718 + -0.3 81,718 + +0.3 81,726 - EX28DRAFT_4515 0.44 +0.2 81,785 - EX28DRAFT_4515 0.75 -0.3 81,793 - EX28DRAFT_4515 0.80 -0.3
Or see this region's nucleotide sequence