Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4379

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4378 and EX28DRAFT_4379 are separated by 955 nucleotidesEX28DRAFT_4379 and EX28DRAFT_4380 are separated by 114 nucleotidesEX28DRAFT_4380 and EX28DRAFT_4381 are separated by 39 nucleotidesEX28DRAFT_4381 and EX28DRAFT_4382 overlap by 1 nucleotides EX28DRAFT_4377: EX28DRAFT_4377 - formate dehydrogenase (quinone-dependent) catalytic subunit, at 41,161 to 44,211 _4377 EX28DRAFT_4378: EX28DRAFT_4378 - RNA, at 43,571 to 43,629 _4378 EX28DRAFT_4379: EX28DRAFT_4379 - formate dehydrogenase family accessory protein FdhD, at 44,585 to 45,421 _4379 EX28DRAFT_4380: EX28DRAFT_4380 - Protein of unknown function (DUF1471), at 45,536 to 45,748 _4380 EX28DRAFT_4381: EX28DRAFT_4381 - Branched-chain amino acid transport protein (AzlD), at 45,788 to 46,111 _4381 EX28DRAFT_4382: EX28DRAFT_4382 - Predicted branched-chain amino acid permease (azaleucine resistance), at 46,111 to 46,770 _4382 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 43.800 kb on + strand, within EX28DRAFT_4377at 43.800 kb on + strand, within EX28DRAFT_4377at 43.804 kb on - strand, within EX28DRAFT_4377at 43.804 kb on - strand, within EX28DRAFT_4377at 43.804 kb on - strand, within EX28DRAFT_4377at 43.990 kb on - strandat 44.007 kb on + strandat 44.026 kb on - strandat 44.027 kb on + strandat 44.027 kb on + strandat 44.027 kb on + strandat 44.027 kb on + strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.028 kb on - strandat 44.058 kb on - strandat 44.062 kb on - strandat 44.067 kb on + strandat 44.067 kb on + strandat 44.067 kb on + strandat 44.068 kb on - strandat 44.071 kb on - strandat 44.097 kb on + strandat 44.097 kb on + strandat 44.097 kb on + strandat 44.099 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.238 kb on + strandat 44.239 kb on - strandat 44.239 kb on - strandat 44.239 kb on - strandat 44.239 kb on - strandat 44.242 kb on + strandat 44.242 kb on + strandat 44.242 kb on + strandat 44.242 kb on + strandat 44.242 kb on + strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.243 kb on - strandat 44.246 kb on + strandat 44.246 kb on + strandat 44.247 kb on - strandat 44.247 kb on - strandat 44.252 kb on + strandat 44.357 kb on - strandat 44.381 kb on + strandat 44.382 kb on - strandat 44.382 kb on - strandat 44.382 kb on - strandat 44.382 kb on - strandat 44.449 kb on + strandat 44.466 kb on + strandat 44.467 kb on - strandat 44.483 kb on + strandat 44.487 kb on + strandat 44.514 kb on + strandat 44.515 kb on - strandat 44.515 kb on - strandat 44.517 kb on + strandat 44.518 kb on - strandat 44.518 kb on - strandat 44.523 kb on + strandat 44.523 kb on + strandat 44.547 kb on + strandat 44.635 kb on - strandat 44.828 kb on + strand, within EX28DRAFT_4379at 44.829 kb on - strand, within EX28DRAFT_4379at 44.829 kb on - strand, within EX28DRAFT_4379at 45.060 kb on + strand, within EX28DRAFT_4379at 45.060 kb on + strand, within EX28DRAFT_4379at 45.245 kb on + strand, within EX28DRAFT_4379at 45.246 kb on - strand, within EX28DRAFT_4379at 45.386 kb on + strandat 45.386 kb on + strandat 45.386 kb on + strandat 45.386 kb on + strandat 45.455 kb on - strandat 45.475 kb on - strandat 45.477 kb on + strandat 45.477 kb on + strandat 45.477 kb on + strandat 45.646 kb on + strand, within EX28DRAFT_4380at 45.742 kb on + strandat 45.794 kb on + strandat 45.795 kb on - strandat 45.821 kb on + strand, within EX28DRAFT_4381at 45.852 kb on - strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.056 kb on + strand, within EX28DRAFT_4381at 46.057 kb on - strand, within EX28DRAFT_4381at 46.276 kb on + strand, within EX28DRAFT_4382at 46.378 kb on + strand, within EX28DRAFT_4382at 46.379 kb on - strand, within EX28DRAFT_4382at 46.379 kb on - strand, within EX28DRAFT_4382

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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43,800 + EX28DRAFT_4377 0.86 -0.4
43,800 + EX28DRAFT_4377 0.86 +0.9
43,804 - EX28DRAFT_4377 0.87 +1.2
43,804 - EX28DRAFT_4377 0.87 -0.3
43,804 - EX28DRAFT_4377 0.87 +0.2
43,990 - -0.7
44,007 + -0.3
44,026 - +0.2
44,027 + +0.7
44,027 + +0.4
44,027 + +0.6
44,027 + -0.0
44,028 - -0.7
44,028 - +0.1
44,028 - +0.2
44,028 - +0.2
44,028 - -0.0
44,028 - +0.8
44,028 - -0.6
44,028 - -0.3
44,058 - +0.5
44,062 - -0.2
44,067 + -0.3
44,067 + +0.1
44,067 + +0.2
44,068 - +0.7
44,071 - -1.0
44,097 + -0.2
44,097 + +0.7
44,097 + -0.9
44,099 + -0.0
44,238 + +0.4
44,238 + +0.9
44,238 + -0.3
44,238 + -0.3
44,238 + +0.1
44,238 + +0.6
44,238 + -0.0
44,238 + -0.1
44,239 - -0.4
44,239 - -0.2
44,239 - -0.2
44,239 - +0.1
44,242 + +0.2
44,242 + +0.1
44,242 + +0.7
44,242 + -1.1
44,242 + -0.3
44,243 - -1.5
44,243 - +0.0
44,243 - +0.3
44,243 - -0.1
44,243 - -0.3
44,243 - +0.6
44,243 - +0.1
44,243 - +0.7
44,243 - -0.5
44,243 - +0.0
44,246 + -0.6
44,246 + +0.3
44,247 - +0.5
44,247 - -0.0
44,252 + -0.0
44,357 - +0.0
44,381 + -2.6
44,382 - -0.8
44,382 - -0.5
44,382 - +0.1
44,382 - -0.8
44,449 + +0.2
44,466 + +0.1
44,467 - -1.5
44,483 + -0.6
44,487 + +0.1
44,514 + -0.0
44,515 - +0.9
44,515 - -0.5
44,517 + +0.5
44,518 - -0.2
44,518 - -2.6
44,523 + -0.4
44,523 + +0.1
44,547 + -0.2
44,635 - +0.1
44,828 + EX28DRAFT_4379 0.29 -0.9
44,829 - EX28DRAFT_4379 0.29 -1.9
44,829 - EX28DRAFT_4379 0.29 -0.2
45,060 + EX28DRAFT_4379 0.57 -0.1
45,060 + EX28DRAFT_4379 0.57 -0.1
45,245 + EX28DRAFT_4379 0.79 -0.4
45,246 - EX28DRAFT_4379 0.79 -0.0
45,386 + -0.7
45,386 + -0.9
45,386 + +0.2
45,386 + +0.1
45,455 - +0.6
45,475 - +0.6
45,477 + -0.0
45,477 + -0.3
45,477 + -0.4
45,646 + EX28DRAFT_4380 0.52 -0.6
45,742 + -0.2
45,794 + -0.3
45,795 - +0.2
45,821 + EX28DRAFT_4381 0.10 -0.6
45,852 - EX28DRAFT_4381 0.20 -0.3
46,056 + EX28DRAFT_4381 0.83 +0.0
46,056 + EX28DRAFT_4381 0.83 +0.2
46,056 + EX28DRAFT_4381 0.83 -1.8
46,056 + EX28DRAFT_4381 0.83 +0.3
46,057 - EX28DRAFT_4381 0.83 +0.4
46,276 + EX28DRAFT_4382 0.25 -0.3
46,378 + EX28DRAFT_4382 0.40 -0.2
46,379 - EX28DRAFT_4382 0.41 -1.2
46,379 - EX28DRAFT_4382 0.41 +0.4

Or see this region's nucleotide sequence